Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4141 |
| Number of amino acids: | 479 |
| Molecular Weight: | 53055.89 Da |
| Theoretical pI: | 5.88 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 38 | 7.93% |
| Cysteine CYS (C) | 9 | 1.88% |
| Glutamic Acid GLU (E) | 24 | 5.01% |
| Aspartic Acid ASP (D) | 25 | 5.22% |
| Glycine GLY (G) | 36 | 7.52% |
| Phynylalanine PHE (F) | 22 | 4.59% |
| Isoleucine ILE (I) | 22 | 4.59% |
| Histidine HIS (H) | 14 | 2.92% |
| Lysine LYS (K) | 26 | 5.43% |
| Methionine MET (M) | 6 | 1.25% |
| Leucine LEU (L) | 48 | 10.02% |
| Asparagine ASN (N) | 24 | 5.01% |
| Glutamine GLN (Q) | 21 | 4.38% |
| Proline PRO (P) | 21 | 4.38% |
| Serine SER (S) | 48 | 10.02% |
| Arginine ARG (R) | 14 | 2.92% |
| Threonine THR (T) | 18 | 3.76% |
| Tryptophan TRP (W) | 10 | 2.09% |
| Valine VAL (V) | 31 | 6.47% |
| Tyrosine TYR (Y) | 22 | 4.59% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2390 |
| Hydrogen | H | 3640 |
| Nitrogen | N | 630 |
| Oxygen | O | 711 |
| Sulphur | S | 15 |
| Formula | C2390H3640N630O711S15 |
| Total Number of Atoms: | 7386 |
| Total number of positively charged residues (ARG + LYS): | 40 |
| Total number of negatively charged residues (ASP + GLU): | 49 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 88280 Absorption 0.1% (=1 g/l) 1.664, assuming all pairs of CYS residues form cystines Ext. coefficient 87780 Absorption 0.1% (=1 g/l) 1.654, assuming all CYS residues are reduced |
| Aromaticity: | 0.113 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 40.12 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [32.36, 26.93, 24.22] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 83.6953 |
| Grand average of hydropathicity (GRAVY): | -0.21 |