Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4137 |
| Number of amino acids: | 398 |
| Molecular Weight: | 44563.85 Da |
| Theoretical pI: | 8.53 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 27 | 6.78% |
| Cysteine CYS (C) | 8 | 2.01% |
| Glutamic Acid GLU (E) | 16 | 4.02% |
| Aspartic Acid ASP (D) | 29 | 7.29% |
| Glycine GLY (G) | 34 | 8.54% |
| Phynylalanine PHE (F) | 18 | 4.52% |
| Isoleucine ILE (I) | 36 | 9.05% |
| Histidine HIS (H) | 12 | 3.02% |
| Lysine LYS (K) | 23 | 5.78% |
| Methionine MET (M) | 10 | 2.51% |
| Leucine LEU (L) | 29 | 7.29% |
| Asparagine ASN (N) | 21 | 5.28% |
| Glutamine GLN (Q) | 7 | 1.76% |
| Proline PRO (P) | 13 | 3.27% |
| Serine SER (S) | 28 | 7.04% |
| Arginine ARG (R) | 26 | 6.53% |
| Threonine THR (T) | 23 | 5.78% |
| Tryptophan TRP (W) | 8 | 2.01% |
| Valine VAL (V) | 19 | 4.77% |
| Tyrosine TYR (Y) | 11 | 2.76% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1979 |
| Hydrogen | H | 3099 |
| Nitrogen | N | 559 |
| Oxygen | O | 579 |
| Sulphur | S | 18 |
| Formula | C1979H3099N559O579S18 |
| Total Number of Atoms: | 6234 |
| Total number of positively charged residues (ARG + LYS): | 49 |
| Total number of negatively charged residues (ASP + GLU): | 45 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 60890 Absorption 0.1% (=1 g/l) 1.366, assuming all pairs of CYS residues form cystines Ext. coefficient 60390 Absorption 0.1% (=1 g/l) 1.355, assuming all CYS residues are reduced |
| Aromaticity: | 0.093 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 31.68 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.40, 24.12, 20.60] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 84.3216 |
| Grand average of hydropathicity (GRAVY): | -0.26 |