Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4122 |
| Number of amino acids: | 428 |
| Molecular Weight: | 46790.54 Da |
| Theoretical pI: | 5.6 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 36 | 8.41% |
| Cysteine CYS (C) | 3 | 0.7% |
| Glutamic Acid GLU (E) | 32 | 7.48% |
| Aspartic Acid ASP (D) | 20 | 4.67% |
| Glycine GLY (G) | 35 | 8.18% |
| Phynylalanine PHE (F) | 15 | 3.5% |
| Isoleucine ILE (I) | 24 | 5.61% |
| Histidine HIS (H) | 16 | 3.74% |
| Lysine LYS (K) | 23 | 5.37% |
| Methionine MET (M) | 13 | 3.04% |
| Leucine LEU (L) | 48 | 11.22% |
| Asparagine ASN (N) | 12 | 2.8% |
| Glutamine GLN (Q) | 14 | 3.27% |
| Proline PRO (P) | 20 | 4.67% |
| Serine SER (S) | 35 | 8.18% |
| Arginine ARG (R) | 15 | 3.5% |
| Threonine THR (T) | 20 | 4.67% |
| Tryptophan TRP (W) | 3 | 0.7% |
| Valine VAL (V) | 31 | 7.24% |
| Tyrosine TYR (Y) | 13 | 3.04% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2091 |
| Hydrogen | H | 3303 |
| Nitrogen | N | 557 |
| Oxygen | O | 627 |
| Sulphur | S | 16 |
| Formula | C2091H3303N557O627S16 |
| Total Number of Atoms: | 6594 |
| Total number of positively charged residues (ARG + LYS): | 38 |
| Total number of negatively charged residues (ASP + GLU): | 52 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 35995 Absorption 0.1% (=1 g/l) 0.769, assuming all pairs of CYS residues form cystines Ext. coefficient 35870 Absorption 0.1% (=1 g/l) 0.767, assuming all CYS residues are reduced |
| Aromaticity: | 0.072 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 46.31 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.31, 23.83, 30.14] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 95.0236 |
| Grand average of hydropathicity (GRAVY): | -0.07 |