Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4118 |
| Number of amino acids: | 454 |
| Molecular Weight: | 51528.47 Da |
| Theoretical pI: | 7.75 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 27 | 5.95% |
| Cysteine CYS (C) | 6 | 1.32% |
| Glutamic Acid GLU (E) | 26 | 5.73% |
| Aspartic Acid ASP (D) | 16 | 3.52% |
| Glycine GLY (G) | 32 | 7.05% |
| Phynylalanine PHE (F) | 20 | 4.41% |
| Isoleucine ILE (I) | 24 | 5.29% |
| Histidine HIS (H) | 12 | 2.64% |
| Lysine LYS (K) | 25 | 5.51% |
| Methionine MET (M) | 10 | 2.2% |
| Leucine LEU (L) | 43 | 9.47% |
| Asparagine ASN (N) | 24 | 5.29% |
| Glutamine GLN (Q) | 13 | 2.86% |
| Proline PRO (P) | 22 | 4.85% |
| Serine SER (S) | 44 | 9.69% |
| Arginine ARG (R) | 18 | 3.96% |
| Threonine THR (T) | 28 | 6.17% |
| Tryptophan TRP (W) | 12 | 2.64% |
| Valine VAL (V) | 23 | 5.07% |
| Tyrosine TYR (Y) | 29 | 6.39% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2342 |
| Hydrogen | H | 3538 |
| Nitrogen | N | 606 |
| Oxygen | O | 677 |
| Sulphur | S | 16 |
| Formula | C2342H3538N606O677S16 |
| Total Number of Atoms: | 7179 |
| Total number of positively charged residues (ARG + LYS): | 43 |
| Total number of negatively charged residues (ASP + GLU): | 42 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 109585 Absorption 0.1% (=1 g/l) 2.127, assuming all pairs of CYS residues form cystines Ext. coefficient 109210 Absorption 0.1% (=1 g/l) 2.119, assuming all CYS residues are reduced |
| Aromaticity: | 0.134 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 46.39 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [33.26, 26.87, 23.35] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 78.1938 |
| Grand average of hydropathicity (GRAVY): | -0.30 |