Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4116 |
| Number of amino acids: | 486 |
| Molecular Weight: | 54119.76 Da |
| Theoretical pI: | 9.07 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 52 | 10.7% |
| Cysteine CYS (C) | 9 | 1.85% |
| Glutamic Acid GLU (E) | 17 | 3.5% |
| Aspartic Acid ASP (D) | 24 | 4.94% |
| Glycine GLY (G) | 36 | 7.41% |
| Phynylalanine PHE (F) | 20 | 4.12% |
| Isoleucine ILE (I) | 25 | 5.14% |
| Histidine HIS (H) | 15 | 3.09% |
| Lysine LYS (K) | 32 | 6.58% |
| Methionine MET (M) | 9 | 1.85% |
| Leucine LEU (L) | 45 | 9.26% |
| Asparagine ASN (N) | 28 | 5.76% |
| Glutamine GLN (Q) | 16 | 3.29% |
| Proline PRO (P) | 22 | 4.53% |
| Serine SER (S) | 30 | 6.17% |
| Arginine ARG (R) | 21 | 4.32% |
| Threonine THR (T) | 25 | 5.14% |
| Tryptophan TRP (W) | 9 | 1.85% |
| Valine VAL (V) | 24 | 4.94% |
| Tyrosine TYR (Y) | 27 | 5.56% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2443 |
| Hydrogen | H | 3750 |
| Nitrogen | N | 664 |
| Oxygen | O | 695 |
| Sulphur | S | 18 |
| Formula | C2443H3750N664O695S18 |
| Total Number of Atoms: | 7570 |
| Total number of positively charged residues (ARG + LYS): | 53 |
| Total number of negatively charged residues (ASP + GLU): | 41 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 90230 Absorption 0.1% (=1 g/l) 1.667, assuming all pairs of CYS residues form cystines Ext. coefficient 89730 Absorption 0.1% (=1 g/l) 1.658, assuming all CYS residues are reduced |
| Aromaticity: | 0.115 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 35.97 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.86, 23.87, 25.31] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 81.1934 |
| Grand average of hydropathicity (GRAVY): | -0.26 |