Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4113 |
| Number of amino acids: | 590 |
| Molecular Weight: | 65848.45 Da |
| Theoretical pI: | 6.5 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 40 | 6.78% |
| Cysteine CYS (C) | 10 | 1.69% |
| Glutamic Acid GLU (E) | 29 | 4.92% |
| Aspartic Acid ASP (D) | 26 | 4.41% |
| Glycine GLY (G) | 42 | 7.12% |
| Phynylalanine PHE (F) | 30 | 5.08% |
| Isoleucine ILE (I) | 29 | 4.92% |
| Histidine HIS (H) | 25 | 4.24% |
| Lysine LYS (K) | 18 | 3.05% |
| Methionine MET (M) | 21 | 3.56% |
| Leucine LEU (L) | 43 | 7.29% |
| Asparagine ASN (N) | 35 | 5.93% |
| Glutamine GLN (Q) | 13 | 2.2% |
| Proline PRO (P) | 50 | 8.47% |
| Serine SER (S) | 22 | 3.73% |
| Arginine ARG (R) | 31 | 5.25% |
| Threonine THR (T) | 47 | 7.97% |
| Tryptophan TRP (W) | 8 | 1.36% |
| Valine VAL (V) | 52 | 8.81% |
| Tyrosine TYR (Y) | 19 | 3.22% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2962 |
| Hydrogen | H | 4547 |
| Nitrogen | N | 807 |
| Oxygen | O | 837 |
| Sulphur | S | 31 |
| Formula | C2962H4547N807O837S31 |
| Total Number of Atoms: | 9184 |
| Total number of positively charged residues (ARG + LYS): | 49 |
| Total number of negatively charged residues (ASP + GLU): | 55 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 72935 Absorption 0.1% (=1 g/l) 1.108, assuming all pairs of CYS residues form cystines Ext. coefficient 72310 Absorption 0.1% (=1 g/l) 1.098, assuming all CYS residues are reduced |
| Aromaticity: | 0.097 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 40.57 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.68, 25.25, 22.54] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 79.9322 |
| Grand average of hydropathicity (GRAVY): | -0.16 |