Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4107 |
| Number of amino acids: | 522 |
| Molecular Weight: | 57396.79 Da |
| Theoretical pI: | 6.18 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 41 | 7.85% |
| Cysteine CYS (C) | 9 | 1.72% |
| Glutamic Acid GLU (E) | 16 | 3.07% |
| Aspartic Acid ASP (D) | 31 | 5.94% |
| Glycine GLY (G) | 41 | 7.85% |
| Phynylalanine PHE (F) | 28 | 5.36% |
| Isoleucine ILE (I) | 28 | 5.36% |
| Histidine HIS (H) | 4 | 0.77% |
| Lysine LYS (K) | 25 | 4.79% |
| Methionine MET (M) | 9 | 1.72% |
| Leucine LEU (L) | 47 | 9% |
| Asparagine ASN (N) | 33 | 6.32% |
| Glutamine GLN (Q) | 30 | 5.75% |
| Proline PRO (P) | 18 | 3.45% |
| Serine SER (S) | 47 | 9% |
| Arginine ARG (R) | 20 | 3.83% |
| Threonine THR (T) | 36 | 6.9% |
| Tryptophan TRP (W) | 10 | 1.92% |
| Valine VAL (V) | 32 | 6.13% |
| Tyrosine TYR (Y) | 17 | 3.26% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2557 |
| Hydrogen | H | 3960 |
| Nitrogen | N | 688 |
| Oxygen | O | 780 |
| Sulphur | S | 18 |
| Formula | C2557H3960N688O780S18 |
| Total Number of Atoms: | 8003 |
| Total number of positively charged residues (ARG + LYS): | 45 |
| Total number of negatively charged residues (ASP + GLU): | 47 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 80830 Absorption 0.1% (=1 g/l) 1.408, assuming all pairs of CYS residues form cystines Ext. coefficient 80330 Absorption 0.1% (=1 g/l) 1.400, assuming all CYS residues are reduced |
| Aromaticity: | 0.105 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 23.30 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.03, 26.63, 21.65] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 81.6667 |
| Grand average of hydropathicity (GRAVY): | -0.18 |