Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4106 |
| Number of amino acids: | 422 |
| Molecular Weight: | 43607.43 Da |
| Theoretical pI: | 5.54 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 46 | 10.9% |
| Cysteine CYS (C) | 1 | 0.24% |
| Glutamic Acid GLU (E) | 18 | 4.27% |
| Aspartic Acid ASP (D) | 16 | 3.79% |
| Glycine GLY (G) | 27 | 6.4% |
| Phynylalanine PHE (F) | 14 | 3.32% |
| Isoleucine ILE (I) | 16 | 3.79% |
| Histidine HIS (H) | 7 | 1.66% |
| Lysine LYS (K) | 23 | 5.45% |
| Methionine MET (M) | 2 | 0.47% |
| Leucine LEU (L) | 50 | 11.85% |
| Asparagine ASN (N) | 21 | 4.98% |
| Glutamine GLN (Q) | 6 | 1.42% |
| Proline PRO (P) | 34 | 8.06% |
| Serine SER (S) | 49 | 11.61% |
| Arginine ARG (R) | 4 | 0.95% |
| Threonine THR (T) | 45 | 10.66% |
| Tryptophan TRP (W) | 0 | 0% |
| Valine VAL (V) | 33 | 7.82% |
| Tyrosine TYR (Y) | 10 | 2.37% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1951 |
| Hydrogen | H | 3126 |
| Nitrogen | N | 498 |
| Oxygen | O | 622 |
| Sulphur | S | 3 |
| Formula | C1951H3126N498O622S3 |
| Total Number of Atoms: | 6200 |
| Total number of positively charged residues (ARG + LYS): | 27 |
| Total number of negatively charged residues (ASP + GLU): | 34 |
| Extinction Coefficient: | This protein does not contain any Tryptophan residues. Experience shows that this could result in more than 10% error in the computed extinction coefficient. Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 14900 Absorption 0.1% (=1 g/l) 0.342, assuming all pairs of CYS residues form cystines Ext. coefficient 14900 Absorption 0.1% (=1 g/l) 0.342, assuming all CYS residues are reduced |
| Aromaticity: | 0.057 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 42.92 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.15, 31.04, 27.49] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 94.5733 |
| Grand average of hydropathicity (GRAVY): | 0.09 |