Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4101 |
| Number of amino acids: | 416 |
| Molecular Weight: | 47481.14 Da |
| Theoretical pI: | 4.45 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 28 | 6.73% |
| Cysteine CYS (C) | 4 | 0.96% |
| Glutamic Acid GLU (E) | 43 | 10.34% |
| Aspartic Acid ASP (D) | 54 | 12.98% |
| Glycine GLY (G) | 22 | 5.29% |
| Phynylalanine PHE (F) | 17 | 4.09% |
| Isoleucine ILE (I) | 20 | 4.81% |
| Histidine HIS (H) | 7 | 1.68% |
| Lysine LYS (K) | 47 | 11.3% |
| Methionine MET (M) | 4 | 0.96% |
| Leucine LEU (L) | 22 | 5.29% |
| Asparagine ASN (N) | 16 | 3.85% |
| Glutamine GLN (Q) | 9 | 2.16% |
| Proline PRO (P) | 27 | 6.49% |
| Serine SER (S) | 26 | 6.25% |
| Arginine ARG (R) | 6 | 1.44% |
| Threonine THR (T) | 18 | 4.33% |
| Tryptophan TRP (W) | 13 | 3.13% |
| Valine VAL (V) | 18 | 4.33% |
| Tyrosine TYR (Y) | 15 | 3.61% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2118 |
| Hydrogen | H | 3175 |
| Nitrogen | N | 533 |
| Oxygen | O | 695 |
| Sulphur | S | 8 |
| Formula | C2118H3175N533O695S8 |
| Total Number of Atoms: | 6529 |
| Total number of positively charged residues (ARG + LYS): | 53 |
| Total number of negatively charged residues (ASP + GLU): | 97 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 94100 Absorption 0.1% (=1 g/l) 1.982, assuming all pairs of CYS residues form cystines Ext. coefficient 93850 Absorption 0.1% (=1 g/l) 1.977, assuming all CYS residues are reduced |
| Aromaticity: | 0.108 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 33.79 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [25.24, 21.88, 23.32] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 58.6538 |
| Grand average of hydropathicity (GRAVY): | -0.99 |