Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4091 |
| Number of amino acids: | 396 |
| Molecular Weight: | 42468.97 Da |
| Theoretical pI: | 7.15 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 21 | 5.3% |
| Cysteine CYS (C) | 13 | 3.28% |
| Glutamic Acid GLU (E) | 15 | 3.79% |
| Aspartic Acid ASP (D) | 22 | 5.56% |
| Glycine GLY (G) | 29 | 7.32% |
| Phynylalanine PHE (F) | 18 | 4.55% |
| Isoleucine ILE (I) | 24 | 6.06% |
| Histidine HIS (H) | 7 | 1.77% |
| Lysine LYS (K) | 30 | 7.58% |
| Methionine MET (M) | 3 | 0.76% |
| Leucine LEU (L) | 26 | 6.57% |
| Asparagine ASN (N) | 30 | 7.58% |
| Glutamine GLN (Q) | 17 | 4.29% |
| Proline PRO (P) | 22 | 5.56% |
| Serine SER (S) | 43 | 10.86% |
| Arginine ARG (R) | 7 | 1.77% |
| Threonine THR (T) | 28 | 7.07% |
| Tryptophan TRP (W) | 3 | 0.76% |
| Valine VAL (V) | 34 | 8.59% |
| Tyrosine TYR (Y) | 4 | 1.01% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1859 |
| Hydrogen | H | 2959 |
| Nitrogen | N | 511 |
| Oxygen | O | 593 |
| Sulphur | S | 16 |
| Formula | C1859H2959N511O593S16 |
| Total Number of Atoms: | 5938 |
| Total number of positively charged residues (ARG + LYS): | 37 |
| Total number of negatively charged residues (ASP + GLU): | 37 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 23210 Absorption 0.1% (=1 g/l) 0.547, assuming all pairs of CYS residues form cystines Ext. coefficient 22460 Absorption 0.1% (=1 g/l) 0.529, assuming all CYS residues are reduced |
| Aromaticity: | 0.063 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 38.12 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [27.53, 31.31, 16.41] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 79.4445 |
| Grand average of hydropathicity (GRAVY): | -0.25 |