Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4088 |
| Number of amino acids: | 326 |
| Molecular Weight: | 33636.17 Da |
| Theoretical pI: | 4.63 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 51 | 15.64% |
| Cysteine CYS (C) | 18 | 5.52% |
| Glutamic Acid GLU (E) | 7 | 2.15% |
| Aspartic Acid ASP (D) | 21 | 6.44% |
| Glycine GLY (G) | 44 | 13.5% |
| Phynylalanine PHE (F) | 15 | 4.6% |
| Isoleucine ILE (I) | 8 | 2.45% |
| Histidine HIS (H) | 5 | 1.53% |
| Lysine LYS (K) | 6 | 1.84% |
| Methionine MET (M) | 4 | 1.23% |
| Leucine LEU (L) | 14 | 4.29% |
| Asparagine ASN (N) | 10 | 3.07% |
| Glutamine GLN (Q) | 16 | 4.91% |
| Proline PRO (P) | 19 | 5.83% |
| Serine SER (S) | 25 | 7.67% |
| Arginine ARG (R) | 10 | 3.07% |
| Threonine THR (T) | 15 | 4.6% |
| Tryptophan TRP (W) | 7 | 2.15% |
| Valine VAL (V) | 16 | 4.91% |
| Tyrosine TYR (Y) | 15 | 4.6% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1469 |
| Hydrogen | H | 2173 |
| Nitrogen | N | 405 |
| Oxygen | O | 464 |
| Sulphur | S | 22 |
| Formula | C1469H2173N405O464S22 |
| Total Number of Atoms: | 4533 |
| Total number of positively charged residues (ARG + LYS): | 16 |
| Total number of negatively charged residues (ASP + GLU): | 28 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 61975 Absorption 0.1% (=1 g/l) 1.843, assuming all pairs of CYS residues form cystines Ext. coefficient 60850 Absorption 0.1% (=1 g/l) 1.809, assuming all CYS residues are reduced |
| Aromaticity: | 0.113 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 36.53 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [23.01, 30.06, 23.31] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 56.1964 |
| Grand average of hydropathicity (GRAVY): | -0.11 |