Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4046 |
| Number of amino acids: | 529 |
| Molecular Weight: | 57924.02 Da |
| Theoretical pI: | 7.05 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 79 | 14.93% |
| Cysteine CYS (C) | 7 | 1.32% |
| Glutamic Acid GLU (E) | 18 | 3.4% |
| Aspartic Acid ASP (D) | 42 | 7.94% |
| Glycine GLY (G) | 58 | 10.96% |
| Phynylalanine PHE (F) | 16 | 3.02% |
| Isoleucine ILE (I) | 8 | 1.51% |
| Histidine HIS (H) | 16 | 3.02% |
| Lysine LYS (K) | 14 | 2.65% |
| Methionine MET (M) | 20 | 3.78% |
| Leucine LEU (L) | 39 | 7.37% |
| Asparagine ASN (N) | 17 | 3.21% |
| Glutamine GLN (Q) | 14 | 2.65% |
| Proline PRO (P) | 11 | 2.08% |
| Serine SER (S) | 24 | 4.54% |
| Arginine ARG (R) | 45 | 8.51% |
| Threonine THR (T) | 23 | 4.35% |
| Tryptophan TRP (W) | 12 | 2.27% |
| Valine VAL (V) | 38 | 7.18% |
| Tyrosine TYR (Y) | 28 | 5.29% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2539 |
| Hydrogen | H | 3889 |
| Nitrogen | N | 753 |
| Oxygen | O | 756 |
| Sulphur | S | 27 |
| Formula | C2539H3889N753O756S27 |
| Total Number of Atoms: | 7964 |
| Total number of positively charged residues (ARG + LYS): | 59 |
| Total number of negatively charged residues (ASP + GLU): | 60 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 108095 Absorption 0.1% (=1 g/l) 1.866, assuming all pairs of CYS residues form cystines Ext. coefficient 107720 Absorption 0.1% (=1 g/l) 1.860, assuming all CYS residues are reduced |
| Aromaticity: | 0.106 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 36.80 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [26.65, 20.79, 29.49] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 70.4158 |
| Grand average of hydropathicity (GRAVY): | -0.31 |