Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4045 |
| Number of amino acids: | 531 |
| Molecular Weight: | 58597.59 Da |
| Theoretical pI: | 6.11 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 76 | 14.31% |
| Cysteine CYS (C) | 7 | 1.32% |
| Glutamic Acid GLU (E) | 32 | 6.03% |
| Aspartic Acid ASP (D) | 34 | 6.4% |
| Glycine GLY (G) | 51 | 9.6% |
| Phynylalanine PHE (F) | 15 | 2.82% |
| Isoleucine ILE (I) | 11 | 2.07% |
| Histidine HIS (H) | 19 | 3.58% |
| Lysine LYS (K) | 19 | 3.58% |
| Methionine MET (M) | 12 | 2.26% |
| Leucine LEU (L) | 45 | 8.47% |
| Asparagine ASN (N) | 18 | 3.39% |
| Glutamine GLN (Q) | 17 | 3.2% |
| Proline PRO (P) | 14 | 2.64% |
| Serine SER (S) | 25 | 4.71% |
| Arginine ARG (R) | 38 | 7.16% |
| Threonine THR (T) | 22 | 4.14% |
| Tryptophan TRP (W) | 11 | 2.07% |
| Valine VAL (V) | 35 | 6.59% |
| Tyrosine TYR (Y) | 30 | 5.65% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2590 |
| Hydrogen | H | 3956 |
| Nitrogen | N | 748 |
| Oxygen | O | 776 |
| Sulphur | S | 19 |
| Formula | C2590H3956N748O776S19 |
| Total Number of Atoms: | 8089 |
| Total number of positively charged residues (ARG + LYS): | 57 |
| Total number of negatively charged residues (ASP + GLU): | 66 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 105575 Absorption 0.1% (=1 g/l) 1.802, assuming all pairs of CYS residues form cystines Ext. coefficient 105200 Absorption 0.1% (=1 g/l) 1.795, assuming all CYS residues are reduced |
| Aromaticity: | 0.105 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 32.52 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [27.68, 20.34, 31.07] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 74.5574 |
| Grand average of hydropathicity (GRAVY): | -0.38 |