Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4028 |
| Number of amino acids: | 569 |
| Molecular Weight: | 62685.62 Da |
| Theoretical pI: | 5.36 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 36 | 6.33% |
| Cysteine CYS (C) | 12 | 2.11% |
| Glutamic Acid GLU (E) | 22 | 3.87% |
| Aspartic Acid ASP (D) | 30 | 5.27% |
| Glycine GLY (G) | 47 | 8.26% |
| Phynylalanine PHE (F) | 21 | 3.69% |
| Isoleucine ILE (I) | 36 | 6.33% |
| Histidine HIS (H) | 4 | 0.7% |
| Lysine LYS (K) | 5 | 0.88% |
| Methionine MET (M) | 10 | 1.76% |
| Leucine LEU (L) | 47 | 8.26% |
| Asparagine ASN (N) | 33 | 5.8% |
| Glutamine GLN (Q) | 30 | 5.27% |
| Proline PRO (P) | 24 | 4.22% |
| Serine SER (S) | 51 | 8.96% |
| Arginine ARG (R) | 40 | 7.03% |
| Threonine THR (T) | 46 | 8.08% |
| Tryptophan TRP (W) | 12 | 2.11% |
| Valine VAL (V) | 45 | 7.91% |
| Tyrosine TYR (Y) | 18 | 3.16% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2757 |
| Hydrogen | H | 4317 |
| Nitrogen | N | 777 |
| Oxygen | O | 852 |
| Sulphur | S | 22 |
| Formula | C2757H4317N777O852S22 |
| Total Number of Atoms: | 8725 |
| Total number of positively charged residues (ARG + LYS): | 45 |
| Total number of negatively charged residues (ASP + GLU): | 52 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 93570 Absorption 0.1% (=1 g/l) 1.493, assuming all pairs of CYS residues form cystines Ext. coefficient 92820 Absorption 0.1% (=1 g/l) 1.481, assuming all CYS residues are reduced |
| Aromaticity: | 0.090 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 35.14 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.46, 27.24, 20.21] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 86.1512 |
| Grand average of hydropathicity (GRAVY): | -0.14 |