Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4002 |
| Number of amino acids: | 627 |
| Molecular Weight: | 69079.66 Da |
| Theoretical pI: | 8.98 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 62 | 9.89% |
| Cysteine CYS (C) | 5 | 0.8% |
| Glutamic Acid GLU (E) | 19 | 3.03% |
| Aspartic Acid ASP (D) | 30 | 4.78% |
| Glycine GLY (G) | 63 | 10.05% |
| Phynylalanine PHE (F) | 21 | 3.35% |
| Isoleucine ILE (I) | 20 | 3.19% |
| Histidine HIS (H) | 10 | 1.59% |
| Lysine LYS (K) | 38 | 6.06% |
| Methionine MET (M) | 10 | 1.59% |
| Leucine LEU (L) | 60 | 9.57% |
| Asparagine ASN (N) | 26 | 4.15% |
| Glutamine GLN (Q) | 32 | 5.1% |
| Proline PRO (P) | 29 | 4.63% |
| Serine SER (S) | 60 | 9.57% |
| Arginine ARG (R) | 22 | 3.51% |
| Threonine THR (T) | 29 | 4.63% |
| Tryptophan TRP (W) | 15 | 2.39% |
| Valine VAL (V) | 27 | 4.31% |
| Tyrosine TYR (Y) | 49 | 7.81% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 3127 |
| Hydrogen | H | 4710 |
| Nitrogen | N | 824 |
| Oxygen | O | 922 |
| Sulphur | S | 15 |
| Formula | C3127H4710N824O922S15 |
| Total Number of Atoms: | 9598 |
| Total number of positively charged residues (ARG + LYS): | 60 |
| Total number of negatively charged residues (ASP + GLU): | 49 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 155760 Absorption 0.1% (=1 g/l) 2.255, assuming all pairs of CYS residues form cystines Ext. coefficient 155510 Absorption 0.1% (=1 g/l) 2.251, assuming all CYS residues are reduced |
| Aromaticity: | 0.136 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 33.57 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.62, 28.39, 24.08] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 72.1372 |
| Grand average of hydropathicity (GRAVY): | -0.38 |