Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4001 |
| Number of amino acids: | 496 |
| Molecular Weight: | 54461.02 Da |
| Theoretical pI: | 7.3 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 46 | 9.27% |
| Cysteine CYS (C) | 7 | 1.41% |
| Glutamic Acid GLU (E) | 17 | 3.43% |
| Aspartic Acid ASP (D) | 27 | 5.44% |
| Glycine GLY (G) | 39 | 7.86% |
| Phynylalanine PHE (F) | 23 | 4.64% |
| Isoleucine ILE (I) | 23 | 4.64% |
| Histidine HIS (H) | 12 | 2.42% |
| Lysine LYS (K) | 28 | 5.65% |
| Methionine MET (M) | 13 | 2.62% |
| Leucine LEU (L) | 36 | 7.26% |
| Asparagine ASN (N) | 27 | 5.44% |
| Glutamine GLN (Q) | 15 | 3.02% |
| Proline PRO (P) | 19 | 3.83% |
| Serine SER (S) | 62 | 12.5% |
| Arginine ARG (R) | 16 | 3.23% |
| Threonine THR (T) | 26 | 5.24% |
| Tryptophan TRP (W) | 10 | 2.02% |
| Valine VAL (V) | 23 | 4.64% |
| Tyrosine TYR (Y) | 27 | 5.44% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2428 |
| Hydrogen | H | 3680 |
| Nitrogen | N | 648 |
| Oxygen | O | 742 |
| Sulphur | S | 20 |
| Formula | C2428H3680N648O742S20 |
| Total Number of Atoms: | 7518 |
| Total number of positively charged residues (ARG + LYS): | 44 |
| Total number of negatively charged residues (ASP + GLU): | 44 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 95605 Absorption 0.1% (=1 g/l) 1.755, assuming all pairs of CYS residues form cystines Ext. coefficient 95230 Absorption 0.1% (=1 g/l) 1.749, assuming all CYS residues are reduced |
| Aromaticity: | 0.121 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 37.53 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.63, 29.64, 22.58] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 69.1129 |
| Grand average of hydropathicity (GRAVY): | -0.31 |