Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_3998 |
| Number of amino acids: | 960 |
| Molecular Weight: | 101642.31 Da |
| Theoretical pI: | 8.94 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 96 | 10% |
| Cysteine CYS (C) | 9 | 0.94% |
| Glutamic Acid GLU (E) | 56 | 5.83% |
| Aspartic Acid ASP (D) | 43 | 4.48% |
| Glycine GLY (G) | 80 | 8.33% |
| Phynylalanine PHE (F) | 39 | 4.06% |
| Isoleucine ILE (I) | 27 | 2.81% |
| Histidine HIS (H) | 16 | 1.67% |
| Lysine LYS (K) | 51 | 5.31% |
| Methionine MET (M) | 16 | 1.67% |
| Leucine LEU (L) | 79 | 8.23% |
| Asparagine ASN (N) | 28 | 2.92% |
| Glutamine GLN (Q) | 24 | 2.5% |
| Proline PRO (P) | 116 | 12.08% |
| Serine SER (S) | 94 | 9.79% |
| Arginine ARG (R) | 58 | 6.04% |
| Threonine THR (T) | 54 | 5.63% |
| Tryptophan TRP (W) | 4 | 0.42% |
| Valine VAL (V) | 60 | 6.25% |
| Tyrosine TYR (Y) | 10 | 1.04% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 4488 |
| Hydrogen | H | 7145 |
| Nitrogen | N | 1273 |
| Oxygen | O | 1369 |
| Sulphur | S | 25 |
| Formula | C4488H7145N1273O1369S25 |
| Total Number of Atoms: | 14300 |
| Total number of positively charged residues (ARG + LYS): | 109 |
| Total number of negatively charged residues (ASP + GLU): | 99 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 37400 Absorption 0.1% (=1 g/l) 0.368, assuming all pairs of CYS residues form cystines Ext. coefficient 36900 Absorption 0.1% (=1 g/l) 0.363, assuming all CYS residues are reduced |
| Aromaticity: | 0.055 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 62.55 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [22.81, 33.12, 25.73] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 71.1875 |
| Grand average of hydropathicity (GRAVY): | -0.39 |