Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_3996 |
| Number of amino acids: | 507 |
| Molecular Weight: | 55730.78 Da |
| Theoretical pI: | 9.01 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 36 | 7.1% |
| Cysteine CYS (C) | 20 | 3.94% |
| Glutamic Acid GLU (E) | 16 | 3.16% |
| Aspartic Acid ASP (D) | 27 | 5.33% |
| Glycine GLY (G) | 37 | 7.3% |
| Phynylalanine PHE (F) | 21 | 4.14% |
| Isoleucine ILE (I) | 32 | 6.31% |
| Histidine HIS (H) | 17 | 3.35% |
| Lysine LYS (K) | 43 | 8.48% |
| Methionine MET (M) | 12 | 2.37% |
| Leucine LEU (L) | 32 | 6.31% |
| Asparagine ASN (N) | 36 | 7.1% |
| Glutamine GLN (Q) | 18 | 3.55% |
| Proline PRO (P) | 25 | 4.93% |
| Serine SER (S) | 38 | 7.5% |
| Arginine ARG (R) | 16 | 3.16% |
| Threonine THR (T) | 32 | 6.31% |
| Tryptophan TRP (W) | 7 | 1.38% |
| Valine VAL (V) | 31 | 6.11% |
| Tyrosine TYR (Y) | 11 | 2.17% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2451 |
| Hydrogen | H | 3865 |
| Nitrogen | N | 693 |
| Oxygen | O | 729 |
| Sulphur | S | 32 |
| Formula | C2451H3865N693O729S32 |
| Total Number of Atoms: | 7770 |
| Total number of positively charged residues (ARG + LYS): | 59 |
| Total number of negatively charged residues (ASP + GLU): | 43 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 56140 Absorption 0.1% (=1 g/l) 1.007, assuming all pairs of CYS residues form cystines Ext. coefficient 54890 Absorption 0.1% (=1 g/l) 0.985, assuming all CYS residues are reduced |
| Aromaticity: | 0.077 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 37.06 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [26.43, 26.82, 18.93] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 74.0631 |
| Grand average of hydropathicity (GRAVY): | -0.34 |