Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_3936 |
| Number of amino acids: | 53 |
| Molecular Weight: | 6135.3 Da |
| Theoretical pI: | 9.08 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 1 | 1.89% |
| Cysteine CYS (C) | 8 | 15.09% |
| Glutamic Acid GLU (E) | 2 | 3.77% |
| Aspartic Acid ASP (D) | 2 | 3.77% |
| Glycine GLY (G) | 4 | 7.55% |
| Phynylalanine PHE (F) | 3 | 5.66% |
| Isoleucine ILE (I) | 2 | 3.77% |
| Histidine HIS (H) | 0 | 0% |
| Lysine LYS (K) | 6 | 11.32% |
| Methionine MET (M) | 2 | 3.77% |
| Leucine LEU (L) | 3 | 5.66% |
| Asparagine ASN (N) | 2 | 3.77% |
| Glutamine GLN (Q) | 3 | 5.66% |
| Proline PRO (P) | 2 | 3.77% |
| Serine SER (S) | 3 | 5.66% |
| Arginine ARG (R) | 4 | 7.55% |
| Threonine THR (T) | 2 | 3.77% |
| Tryptophan TRP (W) | 2 | 3.77% |
| Valine VAL (V) | 2 | 3.77% |
| Tyrosine TYR (Y) | 0 | 0% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 262 |
| Hydrogen | H | 420 |
| Nitrogen | N | 78 |
| Oxygen | O | 72 |
| Sulphur | S | 10 |
| Formula | C262H420N78O72S10 |
| Total Number of Atoms: | 842 |
| Total number of positively charged residues (ARG + LYS): | 10 |
| Total number of negatively charged residues (ASP + GLU): | 4 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 11500 Absorption 0.1% (=1 g/l) 1.874, assuming all pairs of CYS residues form cystines Ext. coefficient 11000 Absorption 0.1% (=1 g/l) 1.793, assuming all CYS residues are reduced |
| Aromaticity: | 0.094 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 20.69 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [22.64, 20.75, 15.09] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 49.6226 |
| Grand average of hydropathicity (GRAVY): | -0.39 |