Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_1393 |
| Number of amino acids: | 230 |
| Molecular Weight: | 25047.97 Da |
| Theoretical pI: | 5.31 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 11 | 4.78% |
| Cysteine CYS (C) | 16 | 6.96% |
| Glutamic Acid GLU (E) | 5 | 2.17% |
| Aspartic Acid ASP (D) | 11 | 4.78% |
| Glycine GLY (G) | 27 | 11.74% |
| Phynylalanine PHE (F) | 15 | 6.52% |
| Isoleucine ILE (I) | 7 | 3.04% |
| Histidine HIS (H) | 1 | 0.43% |
| Lysine LYS (K) | 5 | 2.17% |
| Methionine MET (M) | 4 | 1.74% |
| Leucine LEU (L) | 10 | 4.35% |
| Asparagine ASN (N) | 17 | 7.39% |
| Glutamine GLN (Q) | 11 | 4.78% |
| Proline PRO (P) | 18 | 7.83% |
| Serine SER (S) | 15 | 6.52% |
| Arginine ARG (R) | 9 | 3.91% |
| Threonine THR (T) | 23 | 10% |
| Tryptophan TRP (W) | 6 | 2.61% |
| Valine VAL (V) | 10 | 4.35% |
| Tyrosine TYR (Y) | 9 | 3.91% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1098 |
| Hydrogen | H | 1624 |
| Nitrogen | N | 298 |
| Oxygen | O | 338 |
| Sulphur | S | 20 |
| Formula | C1098H1624N298O338S20 |
| Total Number of Atoms: | 3378 |
| Total number of positively charged residues (ARG + LYS): | 14 |
| Total number of negatively charged residues (ASP + GLU): | 16 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 47410 Absorption 0.1% (=1 g/l) 1.893, assuming all pairs of CYS residues form cystines Ext. coefficient 46410 Absorption 0.1% (=1 g/l) 1.853, assuming all CYS residues are reduced |
| Aromaticity: | 0.130 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 38.01 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [24.78, 33.48, 13.04] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 46.2174 |
| Grand average of hydropathicity (GRAVY): | -0.35 |