Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_1342 |
| Number of amino acids: | 248 |
| Molecular Weight: | 25941.78 Da |
| Theoretical pI: | 6.49 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 15 | 6.05% |
| Cysteine CYS (C) | 17 | 6.85% |
| Glutamic Acid GLU (E) | 8 | 3.23% |
| Aspartic Acid ASP (D) | 11 | 4.44% |
| Glycine GLY (G) | 29 | 11.69% |
| Phynylalanine PHE (F) | 10 | 4.03% |
| Isoleucine ILE (I) | 9 | 3.63% |
| Histidine HIS (H) | 5 | 2.02% |
| Lysine LYS (K) | 14 | 5.65% |
| Methionine MET (M) | 6 | 2.42% |
| Leucine LEU (L) | 26 | 10.48% |
| Asparagine ASN (N) | 10 | 4.03% |
| Glutamine GLN (Q) | 5 | 2.02% |
| Proline PRO (P) | 15 | 6.05% |
| Serine SER (S) | 30 | 12.1% |
| Arginine ARG (R) | 4 | 1.61% |
| Threonine THR (T) | 12 | 4.84% |
| Tryptophan TRP (W) | 3 | 1.21% |
| Valine VAL (V) | 14 | 5.65% |
| Tyrosine TYR (Y) | 5 | 2.02% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1132 |
| Hydrogen | H | 1780 |
| Nitrogen | N | 302 |
| Oxygen | O | 349 |
| Sulphur | S | 23 |
| Formula | C1132H1780N302O349S23 |
| Total Number of Atoms: | 3586 |
| Total number of positively charged residues (ARG + LYS): | 18 |
| Total number of negatively charged residues (ASP + GLU): | 19 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 24950 Absorption 0.1% (=1 g/l) 0.962, assuming all pairs of CYS residues form cystines Ext. coefficient 23950 Absorption 0.1% (=1 g/l) 0.923, assuming all CYS residues are reduced |
| Aromaticity: | 0.073 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 38.25 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [27.02, 33.87, 22.18] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 77.4598 |
| Grand average of hydropathicity (GRAVY): | 0.09 |