Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_1333 |
| Number of amino acids: | 246 |
| Molecular Weight: | 25875.17 Da |
| Theoretical pI: | 8.36 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 14 | 5.69% |
| Cysteine CYS (C) | 19 | 7.72% |
| Glutamic Acid GLU (E) | 8 | 3.25% |
| Aspartic Acid ASP (D) | 9 | 3.66% |
| Glycine GLY (G) | 34 | 13.82% |
| Phynylalanine PHE (F) | 11 | 4.47% |
| Isoleucine ILE (I) | 11 | 4.47% |
| Histidine HIS (H) | 4 | 1.63% |
| Lysine LYS (K) | 16 | 6.5% |
| Methionine MET (M) | 6 | 2.44% |
| Leucine LEU (L) | 20 | 8.13% |
| Asparagine ASN (N) | 5 | 2.03% |
| Glutamine GLN (Q) | 5 | 2.03% |
| Proline PRO (P) | 18 | 7.32% |
| Serine SER (S) | 17 | 6.91% |
| Arginine ARG (R) | 6 | 2.44% |
| Threonine THR (T) | 16 | 6.5% |
| Tryptophan TRP (W) | 3 | 1.22% |
| Valine VAL (V) | 17 | 6.91% |
| Tyrosine TYR (Y) | 7 | 2.85% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1145 |
| Hydrogen | H | 1795 |
| Nitrogen | N | 301 |
| Oxygen | O | 331 |
| Sulphur | S | 25 |
| Formula | C1145H1795N301O331S25 |
| Total Number of Atoms: | 3597 |
| Total number of positively charged residues (ARG + LYS): | 22 |
| Total number of negatively charged residues (ASP + GLU): | 17 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 28055 Absorption 0.1% (=1 g/l) 1.084, assuming all pairs of CYS residues form cystines Ext. coefficient 26930 Absorption 0.1% (=1 g/l) 1.041, assuming all CYS residues are reduced |
| Aromaticity: | 0.085 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 39.71 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.05, 30.08, 19.51] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 74.878 |
| Grand average of hydropathicity (GRAVY): | 0.15 |