Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_1331 |
| Number of amino acids: | 245 |
| Molecular Weight: | 26287.3 Da |
| Theoretical pI: | 9.18 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 20 | 8.16% |
| Cysteine CYS (C) | 16 | 6.53% |
| Glutamic Acid GLU (E) | 2 | 0.82% |
| Aspartic Acid ASP (D) | 9 | 3.67% |
| Glycine GLY (G) | 24 | 9.8% |
| Phynylalanine PHE (F) | 14 | 5.71% |
| Isoleucine ILE (I) | 9 | 3.67% |
| Histidine HIS (H) | 3 | 1.22% |
| Lysine LYS (K) | 14 | 5.71% |
| Methionine MET (M) | 2 | 0.82% |
| Leucine LEU (L) | 18 | 7.35% |
| Asparagine ASN (N) | 9 | 3.67% |
| Glutamine GLN (Q) | 5 | 2.04% |
| Proline PRO (P) | 21 | 8.57% |
| Serine SER (S) | 23 | 9.39% |
| Arginine ARG (R) | 11 | 4.49% |
| Threonine THR (T) | 16 | 6.53% |
| Tryptophan TRP (W) | 3 | 1.22% |
| Valine VAL (V) | 14 | 5.71% |
| Tyrosine TYR (Y) | 12 | 4.9% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1178 |
| Hydrogen | H | 1807 |
| Nitrogen | N | 315 |
| Oxygen | O | 333 |
| Sulphur | S | 18 |
| Formula | C1178H1807N315O333S18 |
| Total Number of Atoms: | 3651 |
| Total number of positively charged residues (ARG + LYS): | 25 |
| Total number of negatively charged residues (ASP + GLU): | 11 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 35380 Absorption 0.1% (=1 g/l) 1.346, assuming all pairs of CYS residues form cystines Ext. coefficient 34380 Absorption 0.1% (=1 g/l) 1.308, assuming all CYS residues are reduced |
| Aromaticity: | 0.118 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 53.97 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.57, 31.43, 17.14] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 67.7143 |
| Grand average of hydropathicity (GRAVY): | -0.02 |