Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_1315 |
| Number of amino acids: | 246 |
| Molecular Weight: | 26060.1 Da |
| Theoretical pI: | 4.6 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 20 | 8.13% |
| Cysteine CYS (C) | 18 | 7.32% |
| Glutamic Acid GLU (E) | 7 | 2.85% |
| Aspartic Acid ASP (D) | 14 | 5.69% |
| Glycine GLY (G) | 25 | 10.16% |
| Phynylalanine PHE (F) | 16 | 6.5% |
| Isoleucine ILE (I) | 8 | 3.25% |
| Histidine HIS (H) | 1 | 0.41% |
| Lysine LYS (K) | 12 | 4.88% |
| Methionine MET (M) | 4 | 1.63% |
| Leucine LEU (L) | 9 | 3.66% |
| Asparagine ASN (N) | 15 | 6.1% |
| Glutamine GLN (Q) | 11 | 4.47% |
| Proline PRO (P) | 20 | 8.13% |
| Serine SER (S) | 21 | 8.54% |
| Arginine ARG (R) | 2 | 0.81% |
| Threonine THR (T) | 20 | 8.13% |
| Tryptophan TRP (W) | 3 | 1.22% |
| Valine VAL (V) | 11 | 4.47% |
| Tyrosine TYR (Y) | 9 | 3.66% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1138 |
| Hydrogen | H | 1701 |
| Nitrogen | N | 295 |
| Oxygen | O | 365 |
| Sulphur | S | 22 |
| Formula | C1138H1701N295O365S22 |
| Total Number of Atoms: | 3521 |
| Total number of positively charged residues (ARG + LYS): | 14 |
| Total number of negatively charged residues (ASP + GLU): | 21 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 31035 Absorption 0.1% (=1 g/l) 1.191, assuming all pairs of CYS residues form cystines Ext. coefficient 29910 Absorption 0.1% (=1 g/l) 1.148, assuming all CYS residues are reduced |
| Aromaticity: | 0.114 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 37.65 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [22.76, 32.93, 16.26] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 48.0488 |
| Grand average of hydropathicity (GRAVY): | -0.25 |