Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_1308 |
| Number of amino acids: | 225 |
| Molecular Weight: | 24653.88 Da |
| Theoretical pI: | 8.66 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 16 | 7.11% |
| Cysteine CYS (C) | 17 | 7.56% |
| Glutamic Acid GLU (E) | 4 | 1.78% |
| Aspartic Acid ASP (D) | 11 | 4.89% |
| Glycine GLY (G) | 19 | 8.44% |
| Phynylalanine PHE (F) | 18 | 8% |
| Isoleucine ILE (I) | 4 | 1.78% |
| Histidine HIS (H) | 2 | 0.89% |
| Lysine LYS (K) | 10 | 4.44% |
| Methionine MET (M) | 2 | 0.89% |
| Leucine LEU (L) | 13 | 5.78% |
| Asparagine ASN (N) | 19 | 8.44% |
| Glutamine GLN (Q) | 9 | 4% |
| Proline PRO (P) | 15 | 6.67% |
| Serine SER (S) | 16 | 7.11% |
| Arginine ARG (R) | 12 | 5.33% |
| Threonine THR (T) | 15 | 6.67% |
| Tryptophan TRP (W) | 3 | 1.33% |
| Valine VAL (V) | 14 | 6.22% |
| Tyrosine TYR (Y) | 6 | 2.67% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1080 |
| Hydrogen | H | 1638 |
| Nitrogen | N | 306 |
| Oxygen | O | 321 |
| Sulphur | S | 19 |
| Formula | C1080H1638N306O321S19 |
| Total Number of Atoms: | 3364 |
| Total number of positively charged residues (ARG + LYS): | 22 |
| Total number of negatively charged residues (ASP + GLU): | 15 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 26440 Absorption 0.1% (=1 g/l) 1.072, assuming all pairs of CYS residues form cystines Ext. coefficient 25440 Absorption 0.1% (=1 g/l) 1.032, assuming all CYS residues are reduced |
| Aromaticity: | 0.120 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 27.75 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [25.78, 30.67, 15.56] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 54.6222 |
| Grand average of hydropathicity (GRAVY): | -0.28 |