Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_1289 |
| Number of amino acids: | 246 |
| Molecular Weight: | 25781.05 Da |
| Theoretical pI: | 4.83 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 26 | 10.57% |
| Cysteine CYS (C) | 16 | 6.5% |
| Glutamic Acid GLU (E) | 7 | 2.85% |
| Aspartic Acid ASP (D) | 14 | 5.69% |
| Glycine GLY (G) | 21 | 8.54% |
| Phynylalanine PHE (F) | 12 | 4.88% |
| Isoleucine ILE (I) | 8 | 3.25% |
| Histidine HIS (H) | 1 | 0.41% |
| Lysine LYS (K) | 12 | 4.88% |
| Methionine MET (M) | 3 | 1.22% |
| Leucine LEU (L) | 16 | 6.5% |
| Asparagine ASN (N) | 9 | 3.66% |
| Glutamine GLN (Q) | 11 | 4.47% |
| Proline PRO (P) | 19 | 7.72% |
| Serine SER (S) | 23 | 9.35% |
| Arginine ARG (R) | 4 | 1.63% |
| Threonine THR (T) | 22 | 8.94% |
| Tryptophan TRP (W) | 2 | 0.81% |
| Valine VAL (V) | 12 | 4.88% |
| Tyrosine TYR (Y) | 8 | 3.25% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1125 |
| Hydrogen | H | 1736 |
| Nitrogen | N | 294 |
| Oxygen | O | 362 |
| Sulphur | S | 19 |
| Formula | C1125H1736N294O362S19 |
| Total Number of Atoms: | 3536 |
| Total number of positively charged residues (ARG + LYS): | 16 |
| Total number of negatively charged residues (ASP + GLU): | 21 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 23920 Absorption 0.1% (=1 g/l) 0.928, assuming all pairs of CYS residues form cystines Ext. coefficient 22920 Absorption 0.1% (=1 g/l) 0.889, assuming all CYS residues are reduced |
| Aromaticity: | 0.089 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 39.10 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [23.58, 29.27, 21.14] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 62.7642 |
| Grand average of hydropathicity (GRAVY): | -0.09 |