Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_1268 |
| Number of amino acids: | 248 |
| Molecular Weight: | 25807.89 Da |
| Theoretical pI: | 4.98 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 27 | 10.89% |
| Cysteine CYS (C) | 16 | 6.45% |
| Glutamic Acid GLU (E) | 8 | 3.23% |
| Aspartic Acid ASP (D) | 12 | 4.84% |
| Glycine GLY (G) | 24 | 9.68% |
| Phynylalanine PHE (F) | 12 | 4.84% |
| Isoleucine ILE (I) | 7 | 2.82% |
| Histidine HIS (H) | 1 | 0.4% |
| Lysine LYS (K) | 13 | 5.24% |
| Methionine MET (M) | 2 | 0.81% |
| Leucine LEU (L) | 12 | 4.84% |
| Asparagine ASN (N) | 10 | 4.03% |
| Glutamine GLN (Q) | 12 | 4.84% |
| Proline PRO (P) | 20 | 8.06% |
| Serine SER (S) | 24 | 9.68% |
| Arginine ARG (R) | 3 | 1.21% |
| Threonine THR (T) | 21 | 8.47% |
| Tryptophan TRP (W) | 3 | 1.21% |
| Valine VAL (V) | 13 | 5.24% |
| Tyrosine TYR (Y) | 8 | 3.23% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1125 |
| Hydrogen | H | 1721 |
| Nitrogen | N | 297 |
| Oxygen | O | 364 |
| Sulphur | S | 18 |
| Formula | C1125H1721N297O364S18 |
| Total Number of Atoms: | 3525 |
| Total number of positively charged residues (ARG + LYS): | 16 |
| Total number of negatively charged residues (ASP + GLU): | 20 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 29420 Absorption 0.1% (=1 g/l) 1.140, assuming all pairs of CYS residues form cystines Ext. coefficient 28420 Absorption 0.1% (=1 g/l) 1.101, assuming all CYS residues are reduced |
| Aromaticity: | 0.093 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 44.49 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [22.18, 31.45, 19.76] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 55.9678 |
| Grand average of hydropathicity (GRAVY): | -0.18 |