Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_1250 |
| Number of amino acids: | 224 |
| Molecular Weight: | 24396.53 Da |
| Theoretical pI: | 8.46 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 17 | 7.59% |
| Cysteine CYS (C) | 16 | 7.14% |
| Glutamic Acid GLU (E) | 2 | 0.89% |
| Aspartic Acid ASP (D) | 14 | 6.25% |
| Glycine GLY (G) | 24 | 10.71% |
| Phynylalanine PHE (F) | 17 | 7.59% |
| Isoleucine ILE (I) | 10 | 4.46% |
| Histidine HIS (H) | 0 | 0% |
| Lysine LYS (K) | 7 | 3.13% |
| Methionine MET (M) | 2 | 0.89% |
| Leucine LEU (L) | 9 | 4.02% |
| Asparagine ASN (N) | 16 | 7.14% |
| Glutamine GLN (Q) | 9 | 4.02% |
| Proline PRO (P) | 15 | 6.7% |
| Serine SER (S) | 10 | 4.46% |
| Arginine ARG (R) | 14 | 6.25% |
| Threonine THR (T) | 20 | 8.93% |
| Tryptophan TRP (W) | 3 | 1.34% |
| Valine VAL (V) | 11 | 4.91% |
| Tyrosine TYR (Y) | 8 | 3.57% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1070 |
| Hydrogen | H | 1619 |
| Nitrogen | N | 301 |
| Oxygen | O | 320 |
| Sulphur | S | 18 |
| Formula | C1070H1619N301O320S18 |
| Total Number of Atoms: | 3328 |
| Total number of positively charged residues (ARG + LYS): | 21 |
| Total number of negatively charged residues (ASP + GLU): | 16 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 29420 Absorption 0.1% (=1 g/l) 1.206, assuming all pairs of CYS residues form cystines Ext. coefficient 28420 Absorption 0.1% (=1 g/l) 1.165, assuming all CYS residues are reduced |
| Aromaticity: | 0.125 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 23.45 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [25.89, 29.02, 13.39] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 54.9107 |
| Grand average of hydropathicity (GRAVY): | -0.25 |