Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_1230 |
| Number of amino acids: | 246 |
| Molecular Weight: | 26358.62 Da |
| Theoretical pI: | 7.84 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 16 | 6.5% |
| Cysteine CYS (C) | 16 | 6.5% |
| Glutamic Acid GLU (E) | 5 | 2.03% |
| Aspartic Acid ASP (D) | 10 | 4.07% |
| Glycine GLY (G) | 31 | 12.6% |
| Phynylalanine PHE (F) | 15 | 6.1% |
| Isoleucine ILE (I) | 6 | 2.44% |
| Histidine HIS (H) | 1 | 0.41% |
| Lysine LYS (K) | 6 | 2.44% |
| Methionine MET (M) | 4 | 1.63% |
| Leucine LEU (L) | 13 | 5.28% |
| Asparagine ASN (N) | 18 | 7.32% |
| Glutamine GLN (Q) | 9 | 3.66% |
| Proline PRO (P) | 21 | 8.54% |
| Serine SER (S) | 14 | 5.69% |
| Arginine ARG (R) | 11 | 4.47% |
| Threonine THR (T) | 24 | 9.76% |
| Tryptophan TRP (W) | 5 | 2.03% |
| Valine VAL (V) | 12 | 4.88% |
| Tyrosine TYR (Y) | 9 | 3.66% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1156 |
| Hydrogen | H | 1735 |
| Nitrogen | N | 319 |
| Oxygen | O | 351 |
| Sulphur | S | 20 |
| Formula | C1156H1735N319O351S20 |
| Total Number of Atoms: | 3581 |
| Total number of positively charged residues (ARG + LYS): | 17 |
| Total number of negatively charged residues (ASP + GLU): | 15 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 41910 Absorption 0.1% (=1 g/l) 1.590, assuming all pairs of CYS residues form cystines Ext. coefficient 40910 Absorption 0.1% (=1 g/l) 1.552, assuming all CYS residues are reduced |
| Aromaticity: | 0.118 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 38.37 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [24.39, 34.15, 15.45] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 50.7723 |
| Grand average of hydropathicity (GRAVY): | -0.28 |