Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_1188 |
| Number of amino acids: | 234 |
| Molecular Weight: | 24601.37 Da |
| Theoretical pI: | 4.51 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 17 | 7.26% |
| Cysteine CYS (C) | 17 | 7.26% |
| Glutamic Acid GLU (E) | 6 | 2.56% |
| Aspartic Acid ASP (D) | 12 | 5.13% |
| Glycine GLY (G) | 31 | 13.25% |
| Phynylalanine PHE (F) | 10 | 4.27% |
| Isoleucine ILE (I) | 8 | 3.42% |
| Histidine HIS (H) | 0 | 0% |
| Lysine LYS (K) | 8 | 3.42% |
| Methionine MET (M) | 2 | 0.85% |
| Leucine LEU (L) | 13 | 5.56% |
| Asparagine ASN (N) | 13 | 5.56% |
| Glutamine GLN (Q) | 11 | 4.7% |
| Proline PRO (P) | 10 | 4.27% |
| Serine SER (S) | 19 | 8.12% |
| Arginine ARG (R) | 4 | 1.71% |
| Threonine THR (T) | 24 | 10.26% |
| Tryptophan TRP (W) | 4 | 1.71% |
| Valine VAL (V) | 13 | 5.56% |
| Tyrosine TYR (Y) | 12 | 5.13% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1067 |
| Hydrogen | H | 1614 |
| Nitrogen | N | 282 |
| Oxygen | O | 350 |
| Sulphur | S | 19 |
| Formula | C1067H1614N282O350S19 |
| Total Number of Atoms: | 3332 |
| Total number of positively charged residues (ARG + LYS): | 12 |
| Total number of negatively charged residues (ASP + GLU): | 18 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 40880 Absorption 0.1% (=1 g/l) 1.662, assuming all pairs of CYS residues form cystines Ext. coefficient 39880 Absorption 0.1% (=1 g/l) 1.621, assuming all CYS residues are reduced |
| Aromaticity: | 0.111 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 36.94 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [25.64, 31.20, 16.24] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 58.3761 |
| Grand average of hydropathicity (GRAVY): | -0.13 |