lncRNA Details

Basic Information

CoNCRAtlas IDCoLNCGB27758
TranscriptMSTRG.8308.1
Length231 bp
GC Content38.70%
LocusA03:105602248-105602478 (+)
Directionsense
Typegenic
Exon Number1
Coding ProbabilityCNCI score: -0.0712704 | CPC2 non-coding probability: 0.9564 | PLncPRO non-coding probability: 0.658
>MSTRG.8308.1 CoLNCGB27758
AGATCAACCTATATGACCTCGAGCCAAACAACATTCCCATCAACCGTTTCTCCTTTTACA
TAATCTTTTTCTTCAACTTTGCCTTAAAAATGAAAATGTTTGAGGGGAATGAAGCCTGGT
CCAATGATACCTTTTACTTTGATTACACTTTACAATCTCAAAGCTGTCGCATCGAGCCAG
CCAACATTCCTCTCAAAGACAACCCATTTCCATCAACTTGCTTGCTTTAA

Not available

Expression Profile

Tissue Specificity Index: Anther: 0.0071; Fiber: 0.236; Leaf: 0.1582; Ovule: 0.0832; Petal: 0.2354; Pistil: 0.0522; Root: 0.0119; Sepal: 0.0562; Stem: 0.1512; Stigma: 0.0086 | Tau: 0.751

Overlapping Elements

No overlap molecule

Targeted By

gba-miR166a, gba-miR166h, gba-miR166g, gba-miR166f, gba-miR166b, gba-miR166g, gba-miR166i, gba-miR166a, gba-miR166h, gba-miR166f

sORFs

>MSTRG.8308.1:13-63 ORF1_MSTRG.8308.1:12:62
ATGACCTCGAGCCAAACAACATTCCCATCAACCGTTTCTCCTTTTACATAA
>MSTRG.8308.1:100-228 ORF2_MSTRG.8308.1:99:227
TTGAGGGGAATGAAGCCTGGTCCAATGATACCTTTTACTTTGATTACACTTTACAATCTCAAAGCTGTCG
CATCGAGCCAGCCAACATTCCTCTCAAAGACAACCCATTTCCATCAACTTGCTTGCTTT
>MSTRG.8308.1:164-229 ORF3_MSTRG.8308.1:163:228
CTGTCGCATCGAGCCAGCCAACATTCCTCTCAAAGACAACCCATTTCCATCAACTTGCTTGCTTTA
>MSTRG.8308.1:90-230 ORF4_MSTRG.8308.1:89:229
ATGAAAATGTTTGAGGGGAATGAAGCCTGGTCCAATGATACCTTTTACTTTGATTACACTTTACAATCTC
AAAGCTGTCGCATCGAGCCAGCCAACATTCCTCTCAAAGACAACCCATTTCCATCAACTTGCTTGCTTTA
A
>MSTRG.8308.1:c202-158 ORF5_MSTRG.8308.1:201:157
TTGTCTTTGAGAGGAATGTTGGCTGGCTCGATGCGACAGCTTTGA
>MSTRG.8308.1:c124-56 ORF6_MSTRG.8308.1:123:55
TTGGACCAGGCTTCATTCCCCTCAAACATTTTCATTTTTAAGGCAAAGTTGAAGAAAAAGATTATGTAA
>MSTRG.8308.1:c43-2 ORF7_MSTRG.8308.1:42:1
TTGATGGGAATGTTGTTTGGCTCGAGGTCATATAGGTTGATC
>MSTRG.8308.1:c180-73 ORF8_MSTRG.8308.1:179:72
CTGGCTCGATGCGACAGCTTTGAGATTGTAAAGTGTAATCAAAGTAAAAGGTATCATTGGACCAGGCTTC
ATTCCCCTCAAACATTTTCATTTTTAAGGCAAAGTTGA

>ORF1_MSTRG.8308.1:12:62 unnamed protein product
MTSSQTTFPSTVSPFT
>ORF2_MSTRG.8308.1:99:227 unnamed protein product, partial
MRGMKPGPMIPFTLITLYNLKAVASSQPTFLSKTTHFHQLACF
>ORF3_MSTRG.8308.1:163:228 unnamed protein product, partial
MSHRASQHSSQRQPISINLLAL
>ORF4_MSTRG.8308.1:89:229 unnamed protein product
MKMFEGNEAWSNDTFYFDYTLQSQSCRIEPANIPLKDNPFPSTCLL
>ORF5_MSTRG.8308.1:201:157 unnamed protein product
MSLRGMLAGSMRQL
>ORF6_MSTRG.8308.1:123:55 unnamed protein product
MDQASFPSNIFIFKAKLKKKIM
>ORF7_MSTRG.8308.1:42:1 unnamed protein product, partial
MMGMLFGSRSYRLI
>ORF8_MSTRG.8308.1:179:72 unnamed protein product
MARCDSFEIVKCNQSKRYHWTRLHSPQTFSFLRQS

Check Peptide Activity