Cotton non-coding RNA atlas

catalogues comprehensive expression and processing information to date on all major classes of cotton non-coding RNA (ncRNA) genes and mature ncRNA annotations, expression levels, sequence and RNA processing information across cotton tissues, cell types, developmental and stress conditions.The content of the database derives from integrating annotation data with curation, annotation, and computational analysis of RNA/small RNA seq.

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To get started, click on the miRNA search to search miRNAs by name/ID, genomic coordinates, or click lncRNA search to search lncRNAs by name/ID, genomic classification, length, or Browse to explore non-coding RNAs by tissue, developmental stage, and treatment wise information. Use Download to download GTF file and sequences of miRNAs/lncRNAs.




Non-coding RNA type Gossypium barbadense Gossypium hirsutum
miRNA 117 240
lncRNA 29619 53721

Github link for lncRNA pipeline: https://github.com/skbinfo/CoNCRAtlas

DOI Cite this database: Singh, A. et al., Long non-coding RNA and microRNA landscape of two major domesticated cotton species.
Computational and Structural Biotechnology Journal (Elsevier): Volume 21, 2023, Pages 3032-3044.