Flagship Cotton ncRNA Resource

CoNCRAtlas

lncRNA • miRNA

Comprehensive atlas of cotton non-coding RNAs across tissues, developmental stages, and stress conditions in two major domesticated species

83,697 ncRNAs • 900+ datasets • 2 species
Explore Database Advanced Search Documentation
Advanced
Examples: miR156 Ghir_D01G000001 chr01:100000-200000
0 Total ncRNAs
0 miRNAs
0 Cotton Species
0 RNA-seq Datasets

Species Coverage

Two major domesticated cotton species
Gossypium barbadense
Sea Island Cotton
miRNAs 117
lncRNAs 29,619
Expression Datasets 250+
Browse Data
Gossypium hirsutum
Upland Cotton
miRNAs 240
lncRNAs 53,721
Expression Datasets 650+
Browse Data

Tools & Resources

Analysis tools and data resources

BLAST

Search sequences against cotton ncRNA database with customizable parameters.

Launch BLAST

Data Download

Access GTF, FASTA, GFF3 sequences, expression matrices, and annotation files.

Download

GitHub

Access analysis pipelines, source code, and comprehensive documentation.

View Code

How to Cite

If you use CoNCRAtlas in your research

Citation

Singh, A. et al. (2023) Long non-coding RNA and microRNA landscape of two major domesticated cotton species. Computational and Structural Biotechnology Journal, 21, 3032-3044.

DOI: 10.1016/j.csbj.2023.05.011
View Publication DOI