Cotton Non-Coding RNA Atlas

A comprehensive resource cataloguing expression and processing information of all major classes of cotton non-coding RNAs across tissues, cell types, developmental stages, and stress conditions.

Integrating ~600 RNA-seq and ~300 small-RNA seq datasets from >60 independent studies


Explore Database Documentation

Database Statistics

83,697
Total ncRNAs
357
miRNAs
2
Cotton Species
~900
RNA-seq Datasets

Species Coverage

Gossypium barbadense
miRNAs117
lncRNAs29,619
Expression ProfilesMultiple Tissues
Browse Data
Gossypium hirsutum
miRNAs240
lncRNAs53,721
Expression ProfilesMultiple Tissues
Browse Data

Analysis Tools & Resources

BLAST

Search your sequences against our cotton ncRNA database.

Launch BLAST

Data Download

Download GTF files and sequences of miRNAs and lncRNAs.

Download Data

Pipeline

Access our lncRNA pipeline on GitHub.

View on GitHub

How to Cite

Singh, A. et al. (2023) Long non-coding RNA and microRNA landscape of two major domesticated cotton species. Computational and Structural Biotechnology Journal, Volume 21, Pages 3032-3044.