This module is developed to find the alignment between the user input (e.g.nucleotide FASTA sequence), and miRNAs and lncRNAs available at CoNCRAtlas database by using BLAST. Here, user can align the input sequences against lncRNAs found in a particular sample by using different E-values for BLAST. For both lncRNA and miRNA default E-value is 10. Users can also choose to search miRNA against precursor miRNA or mature miRNAs.