| CoNCRAtlas ID |
CoMIRGB082 |
|---|
| Mature miRNA sequence |
UCGGACCAGGCUUCAUUCCCC |
|---|
| Locus |
D07:21746302-21746470(-) |
|---|
| Alignment |
Displayed Location: CM018221.1:21746317-21746483 Strand: -
GCGGAGUAACCAAUUUGAGGGGAAUGUUGUCUGGCUCGAGGAGACUUGUUUUUAAUCCAUUUCUUGCAUUACAAUUCAUUUAUGGAUCUGGUUAUUGCUGUAAUGGAUUGAGGCUGUACAAGGUCGUCGGACCAGGCUUCAUUCCCCCUAAUGCUUGCUCCUAUAUG
..(((((((.((..(((.((((((((..((((((.((((.((..(((((((((((((((((....(((...(((((((....))))).)).....)))...))))))))))))....))))).)).)))).))))))..)))))))).))))).)))))))....))
..............................................................................................................................UCGGACCAGGCUUCAUUCCCC.................... gba-miR166i
....................GGAAUGUUGUCUGGCUCGAGG.............................................................................................................................. gba-miR166i*
|
|---|
| miRNA family |
miR166 |
|---|
Expression profile
| Tissue specificity index | Ovule: 0.0185; root: 0.1568; shoot apical: 0.0723; fiber: 0.0172; all tissues: 0.7351 | Tau: 0.9099
|
|---|
Additional Information
Overlapping Elements:
| sORF |
>CoMIRGB082:40-90 ORF1_CoMIRGB082:39:89
ATGAAGCCTGGTCCGACGACCTTGTACAGCCTCAATCCATTACAGCAATAA
>CoMIRGB082:103-168 ORF2_CoMIRGB082:102:167
ATGAATTGTAATGCAAGAAATGGATTAAAAACAAGTCTCCTCGAGCCAGACAACATTCCCCTCAAA
>CoMIRGB082:47-106 ORF3_CoMIRGB082:46:105
CTGGTCCGACGACCTTGTACAGCCTCAATCCATTACAGCAATAACCAGATCCATAAATGA
>CoMIRGB082:c167-3 ORF4_CoMIRGB082:166:2
TTGAGGGGAATGTTGTCTGGCTCGAGGAGACTTGTTTTTAATCCATTTCTTGCATTACAATTCATTTATG
GATCTGGTTATTGCTGTAATGGATTGAGGCTGTACAAGGTCGTCGGACCAGGCTTCATTCCCCCTAATGC
TTGCTCCTATATGGGACTGCCGACT
>CoMIRGB082:c151-71 ORF5_CoMIRGB082:150:70
CTGGCTCGAGGAGACTTGTTTTTAATCCATTTCTTGCATTACAATTCATTTATGGATCTGGTTATTGCTG
TAATGGATTGA
>CoMIRGB082:c31-2 ORF6_CoMIRGB082:30:1
ATGCTTGCTCCTATATGGGACTGCCGACTG
>ORF1_CoMIRGB082:39:89 unnamed protein product
MKPGPTTLYSLNPLQQ
>ORF2_CoMIRGB082:102:167 unnamed protein product, partial
MNCNARNGLKTSLLEPDNIPLK
>ORF3_CoMIRGB082:46:105 unnamed protein product
MVRRPCTASIHYSNNQIHK
>ORF4_CoMIRGB082:166:2 unnamed protein product, partial
LRGMLSGSRRLVFNPFLALQFIYGSGYCCNGLRLYKVVGPGFIPPNACSYMGLPT
>ORF5_CoMIRGB082:150:70 unnamed protein product
MARGDLFLIHFLHYNSFMDLVIAVMD
>ORF6_CoMIRGB082:30:1 unnamed protein product, partial
MLAPIWDCRL
Check Peptide activity
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