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The user can browse all the information of the PtncRNAdb sequences grouped by Tissue, Study, tncRNA type, tncRNA modification, and Organelle via the options provided below which can be easily accessed by clicking, followed by choices which the user can select according to their need. For more information see HELP page.
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- SRP114786: miRNA mobility is a highly regulated process in plants
- SRP117050: Arabidopsis MOS4-associated complex promotes microRNA biogenesis and pre-mRNA splicing [ncRNA-seq]
- SRP118113: Total and AGO1 immunoprecipitated small RNA from Arabidopsis thaliana wild-type and ago1-57 mutant
- SRP118832: Small RNA-seq from Cuscuta campestris with various host plants
- SRP119117: Auxin regulated cold responsive small RNA
- SRP119505: The effect of cdc5-1 on small RNA accumulation
- SRP119725: Computational guideline for small RNA profiling in virus-infected plants
- SRP119848: The effect of ddl-1 on small RNA profile
- SRP120564: Comprehensive Analysis of RDR1/2/6-independent Small RNAs in Arabidopsis thaliana
- SRP121328: The effect of MAC3 and MAC5A on small RNA accumulation
- SRP121334: microRNA-triggered transposon small RNAs mediate genome dosage response (sRNA-Seq)
- SRP121335: microRNA-triggered transposon small RNAs mediate genome dosage response (mir845 sRNA-Seq)
- SRP125086: The Anaphase Promoting Complex/Cyclosome degrades DMS3 to maintain RNA-directed DNA Methylation in Arabidopsis [small RNA-seq]
- SRP126767: RNA-directed DNA methylation involves co-transcriptional small RNA-guided slicing of Pol V transcripts in Arabidopsis.
- SRP127334: The Complex Architecture of Transgene Insertions
- SRP128627: Arabidopsis thaliana smRNA-seq raw sequence reads
- SRP128925: Systematic comparison of small RNA library preparation protocols for next-generation sequencing
- SRP131323: MINIYO and QUATRE-QUART 2 Are Required for the Assembly of RNA Polymerase V in Arabidopsis
- SRP132084: The profile of Arabidopsis small RNAs that are presented in purified B. cinerea protoplasts from the infected tissues
- SRP133216: sRNAseq from Arabidopsis leaves non-infected and infected with Turnip mosaic virus (TuMV)
- SRP133653: The disease resistance protein SNC1 represses the biogenesis of microRNAs and phased siRNAs [small RNA]
- SRP135923: RNA silencing suppression mediated by Phytophthora sojae effector PSR2
- SRP139336: Movement of Arabidopsis thaliana inverted repeat small RNA between leaves vascular and epidermis tissues
- SRP140414: Arabidopsis thaliana small RNA-Seq of Col-0
- SRP140816: Deciphering the role of miRNA in natural population of Arabidopsis thaliana along altitudinal gradient
- SRP150996: The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [smallRNA-Seq]
- SRP151445: Small RNA libraries
- SRP152755: Small RNA sequencing data in response to Brassinosteroid treatment of A. thaliana root and shoot tissues
- SRP158264: Small RNA-seq of the Arabidopsis mRNA export mutant aly1 and associated controls
- SRP158968: Targeted cleavage of nad6 mRNA induced by a modified pentatricopeptide repeat protein in plant mitochondria
- SRP162482: Arabidopsis thaliana cultivar:Columbia-0 Genome sequencing
- SRP163044: Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA
- SRP166072: The Protein Phosphatase 4 Complex Promotes Transcription and Processing of Primary microRNAs in Arabidopsis [ncRNA-Seq]
- SRP168612: mRNA adenosine methylase (MTA) deposits m6A on pri-miRNAs to modulate miRNA biogenesis in Arabidopsis thaliana [smallRNAs]
- SRP173896: Arabidopsis meiocyte sRNA sequencing
- SRP173992: Epigenetic and biochemical determinants of Pol IV-dependent genome surveillance in plants
- SRP176450: Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [small RNA-seq]
- SRP185774: FIERY1 promotes microRNA accumulation by suppressing rRNA-derived small interfering RNAs in Arabidopsis [miRNA-seq]
- SRP187849: The poly(A) polymerase PAPS1 interacts with the RNA-directed DNA methylation pathway in sporophyte and pollen development [small RNA]
- SRP189599: Arabidopsis retrotransposon virus-like-particles and their regulation by epigenetically activated small RNA
- SRP192391: siRNA in cer7
- SRP194124: Small RNA-seq from FPLC-fractionated leaf and flower crude extracts
- SRP197546: Proteasome subunit RPT2a promotes PTGS through repressing RNA quality control in Arabidopsis
- SRP199045: SERRATE recruits the NEXT complex to control the levels of miRNA precursors in Arabidopsis
- SRP200788: Small RNA-seq from multiple Cuscuta species parasitizing Arabidopsis
- SRP201113: AtDXO1 possesses deNADding and exonuclease activities and plays pleiotropic roles in gene regulation
- SRP201460: Photodamage repair pathways contribute to the accurate maintenance of DNA methylome landscape upon UV exposure
- SRP212095: Expression profiling by small RNA-seq for identifying miRNA associated with sound vibration in plant
- SRP212697: Arabidopsis RNA Polymerase IV generates 21-22 nucleotide small RNAs that can participate in RNA-directed DNA methylation and may regulate genes
- SRP215328: A universal
- SRP218715: Plant 22-nt siRNAs mediate translational repression and stress adaptation
- SRP218721: Plant 22-nt siRNAs mediate translational repression and stress adaptation
- SRP218938: Small RNA transcriptome of Arabidopsis thaliana stigma
- SRP219800: Arabidopsis thaliana strain:Columbia-0 Raw sequence reads
- SRP219804: Arabidopsis thaliana strain:Columbia-0 Raw sequence reads
- SRP220305: Polymerase IV Plays a Crucial Role in Pollen Development in Capsella
- SRP229347: Intronic long noncoding RNAs activate host gene expression by affecting histone modification in Arabidopsis (smallRNA-seq)
- SRP230419: Epigenetic memory marks determine epiallele stability at loci targeted by de novo DNA methylation
- SRP231491: Identification of Plant growth promoting rhizobacteria-responsive miRNAs from Atabidopsis
- SRP234703: Small RNA sequencing from transgenic Arabidopsis 35S:GUS (lines 6b4 and L1) and 35S:SUG (line SUG6)
- SRP242093: Arabidopsis thaliana small RNA from epidermis and vasculature tissues of Col-0 and ago1 mutants leaves
- SRP245378: A low-bias and sensitive small RNA library preparation method using randomized splint ligation
- SRP255912: URT1-mediated uridylation prevents the production of spurious siRNAs targeting mRNAs in Arabidopsis thaliana
- SRP255913: The CCR4-NOT complex component NOT1 regulates RNA-directed DNA methylation and transcriptional silencing by facilitating Pol IV-dependent siRNA production [small RNA-seq]
- SRP256233: 22-nucleotide siRNAs mediate translational repression and trigger a silencing storm [es]
- SRP256234: 22-nucleotide siRNAs mediate translational repression and trigger a silencing storm
- SRP261411: Linking Key Steps of MicroRNA Biogenesis by TREX-2 and the Nuclear Pore Complex in Arabidopsis [miRNA-Seq]
- SRP262874: NTP4 modulates miRNA accumulation via asymmetric modification of miRNA-3p/5p duplex
- SRP268298: Chromatin regulates expression of small RNAs to help maintain transposon methylome homeostasis in Arabidopsis
- SRP275708: Plastid retrograde regulation of miRNAs expression in response to light stress
- SRP042145: Identification and characterization of wilt and salt stress-responsive microRNAs from chickpea by high-throughput sequencing.
- SRP048805: Small RNA Solexa sequencing of chickpea (Cicer arietinum)
- SRP049984: Bioinformatics approaches for viral metagenomics in plants using short RNAs : model case of study and application to a Cicer arietinum population
- SRP137438: Identification and expression analysis of miRNA(s) in plant growth promoting rhizobacteria mediated drought stress alleviation in Cicer arietinum L.
- SRP198805: Small RNAs during seed development in large-seeded chickpea
- SRP048923: Genome-wide identification of microRNAs and their targets involved in the phyB-mediated light signaling pathway in rice
- SRP051715: Oryza sativa Japonica Group strain:02428 Transcriptome or Gene expression
- SRP055908: MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors [miRNA-Seq]
- SRP058724: Next Generation Sequencing Facilitates Small RNA Mediated Rice Resistance to Xoo
- SRP062248: Variation in the expression of miRNAs and mRNAs in rice (Oryza sativa)
- SRP064377: MiRNA analysis of rice seed germination
- SRP071934: Comparative small RNA analysis of pollen development in autotetraploid and diploid rice
- SRP075099: The ortholog of DDM1 is mainly required for CHG and CG methylation of heterochromatin and is involved in DRM2-mediated CHH methylation that targets mostly genic regions of the rice genome
- SRP093841: Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice
- SRP109719: Comprehensive Profiling of Transcriptome
- SRP115582: Down-regulated expression of OsDCL3b affects small RNA biogenesis and panicle development in rice
- SRP116370: CRISPR-Cas9 based genome editing reveals new insights into microRNA function and regulation in rice
- SRP126970: Temporal expression of small RNAs during rice anther development
- SRP127576: DDM1 represses noncoding RNA expression and RNA-directed DNA methylation in heterochromatin
- SRP171060: A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]
- SRP197532: Integrated analysis of microRNA and mRNA expression profiles of rice seedlings in response to zinc deficiency and recovery (miRNA-seq)
- SRP198621: Control of Rice Tillering by RNA-directed DNA Methylation at Miniature Inverted-repeat Transposable Elements
- SRP213040: Small RNA sequencing of Rice leaves infected with the African Xanthomonas oryzae pv. oryzae strain BAI3
- SRP029380: Transcriptome Analyses of Reniform Nematode Pathogen Infection
- SRP041342: Identification of MicroRNAs and Their Targets in Tomato Infected with Cucumber Mosaic Virus
- SRP043069: Solanum lycopersicum
- SRP053415: Small RNA profiling during anther development in 7B-1 male-sterile tomato mutant and its wild type
- SRP055077: sRNA profiling between the 7B-1 male-sterile tomato and its wild type in response to abiotic stress
- SRP058711: Large scale sequencing of viroid derived small RNA in Potato spindle tuber viroid infected tomato plants
- SRP067263: Genome-wide analysis of Alternaria stress-responsive microRNAs in tomato
- SRP090890: Genome-wide identification and characterization of miRNAome from tomato roots (Solanum lycopersicum) and root-knot nematode (Meloidogyne incognita) during susceptible and resistant interactions.
- SRP102806: Paramutation of natural epialleles in tomato [sRNA]
- SRP108197: TYLCV-resistant breeding line CLN2777A (R) small RNA raw sequence reads with TYLCV infection
- SRP108311: TYLCV- susceptible breeding line TMXA48-4-0 (S) small RNA sequencing reads
- SRP117253: Tomato root miRNA dynamics in response to Potato Cyst Nematode (Globodera rostochiensis) infection
- SRP136048: Functional role of tomato DCL2b in plant development and defense against virus
- SRP151038: Identification of Exosome-Like Nanoparticle Derived MicroRNAs from Eleven Edible Plants
- SRP168458: Solanum lycopersicum STTM lines
- SRP170113: Application of Next Generation Sequencing Using Virus-Derived Small RNAs for New Virus Detection in Tomato Samples in Serbia
- SRP009078: Genome-wide profiling of small RNAs in maize under abiotic stresses
- SRP031907: Distinct small RNA populations act antagonistically in formation of heterosis
- SRP060265: Genome-wide characterization of maize small RNA loci and their regulation in the required to maintain repression6-1 (rmr6-1) mutant and long-term abiotic stresses
- SRP069759: Reference annotation for small RNA-producing genes in maize
- SRP104698: Differential small RNA expression upon induction and establishment of Tuxpeño maize embryogenic callus cultures
- SRP168415: Transcriptome and sRNA profiling of Maize dcl5 CRISPR null alleles
- SRP190955: Genome-wide transcriptomic responses to heat stress in maize
- SRP256576: Small RNAs in monocots
- Adenosine->N6-isopentenyl adenosine (i6A), Threonylcarbamoyladenosine (t6A)
- Adenosine->1-methyladenosine (m1A), 1-methylinosine (m1I), 2-methylthio-N6-isopentenyladenosine (ms2i6A)
- Cytosine->3-methylcytosine (m3C)
- Guanine->1-methyl guanosine (m1G)
- Guanine->Methylguanosine (m2G), N2-dimethylguanosine (m22G)
- Uridine->Dihydrouridine (D)
- Uridine->Pseudouridine (Y/Ψ)
© Developed by Dr. Shailesh Laboratory | National Institute of Plant Genome Research (NIPGR), New Delhi, India | DBT