lncRNA Details

Basic Information

CoNCRAtlas IDCoLNCGB22574
TranscriptMSTRG.69964.2
Length328 bp
GC Content37.00%
LocusD10:6222457-6222784 (-)
Directionsense
Typegenic
Exon Number2
Coding ProbabilityCNCI score: -0.0004096 -0.0004096 | CPC2 non-coding probability: 0.987323 0.987323 | PLncPRO non-coding probability: 0.931 0.931
>MSTRG.69964.2 CoLNCGB22574
CAAAATAGAGGAAATGCCCAAAGTAAAACACATCATCTGGTTTTACTATATGAAAATAAT
CTTTGGTTGATTTAACCGGTGAATTGATCTTGAATGAGTAGGGTGGGTGGTTAACTGCTG
CTTTCACCAAATTACTCAACAAGTATATTGCGAACATTTTCTTCGCAGACCTTAACAATT
CATTTTAGCTCAAAAAATCAGGTAATTTAGTCTTCTTCAGTTTCTATTTTTGTTGGAAGC
ATAGGATGGATACTGACGATTTCTGGGCTAATCTCAGTAATGGTGCTTGTGCAGCTAGGT
CCACCATAATTGCATTCTGTCAACGCC

Not available

Expression Profile

Tissue Specificity Index: Anther: 0.0579; Bract: 0.1239; Fiber: 0.0768; Filament: 0.0327; Hypocotyl: 0.236; Leaf: 0.1176; Ovule: 0.0368; Petal: 0.0162; Pistil: 0.0165; Root: 0.0229; Sepal: 0.1402; Stem: 0.0559; Stigma: 0.0186; Torus: 0.0482 | Tau: 0.7509

Overlapping Elements

No overlap molecule

Targeted By

gba-miR162, gba-miR390b

sORFs

>MSTRG.69964.2:37-75 ORF1_MSTRG.69964.2:36:74
CTGGTTTTACTATATGAAAATAATCTTTGGTTGATTTAA
>MSTRG.69964.2:115-210 ORF2_MSTRG.69964.2:114:209
CTGCTGCTTTCACCAAATTACTCAACAAGTATATTGCGAACATTTTCTTCGCAGACCTTAACAATTCATT
TTAGCTCAAAAAATCAGGTAATTTAG
>MSTRG.69964.2:253-309 ORF3_MSTRG.69964.2:252:308
CTGACGATTTCTGGGCTAATCTCAGTAATGGTGCTTGTGCAGCTAGGTCCACCATAA
>MSTRG.69964.2:14-70 ORF4_MSTRG.69964.2:13:69
ATGCCCAAAGTAAAACACATCATCTGGTTTTACTATATGAAAATAATCTTTGGTTGA
>MSTRG.69964.2:63-101 ORF5_MSTRG.69964.2:62:100
TTGGTTGATTTAACCGGTGAATTGATCTTGAATGAGTAG
>MSTRG.69964.2:246-326 ORF6_MSTRG.69964.2:245:325
ATGGATACTGACGATTTCTGGGCTAATCTCAGTAATGGTGCTTGTGCAGCTAGGTCCACCATAATTGCAT
TCTGTCAACGC
>MSTRG.69964.2:c168-136 ORF7_MSTRG.69964.2:167:135
CTGCGAAGAAAATGTTCGCAATATACTTGTTGA
>MSTRG.69964.2:c36-1 ORF8_MSTRG.69964.2:35:0
ATGATGTGTTTTACTTTGGGCATTTCCTCTATTTTG
>MSTRG.69964.2:c323-207 ORF9_MSTRG.69964.2:322:206
TTGACAGAATGCAATTATGGTGGACCTAGCTGCACAAGCACCATTACTGAGATTAGCCCAGAAATCGTCA
GTATCCATCCTATGCTTCCAACAAAAATAGAAACTGAAGAAGACTAA
>MSTRG.69964.2:c307-224 ORF10_MSTRG.69964.2:306:223
ATGGTGGACCTAGCTGCACAAGCACCATTACTGAGATTAGCCCAGAAATCGTCAGTATCCATCCTATGCT
TCCAACAAAAATAG
>MSTRG.69964.2:c220-185 ORF11_MSTRG.69964.2:219:184
CTGAAGAAGACTAAATTACCTGATTTTTTGAGCTAA
>MSTRG.69964.2:c178-2 ORF12_MSTRG.69964.2:177:1
TTGTTAAGGTCTGCGAAGAAAATGTTCGCAATATACTTGTTGAGTAATTTGGTGAAAGCAGCAGTTAACC
ACCCACCCTACTCATTCAAGATCAATTCACCGGTTAAATCAACCAAAGATTATTTTCATATAGTAAAACC
AGATGATGTGTTTTACTTTGGGCATTTCCTCTATTTT

>ORF1_MSTRG.69964.2:36:74 unnamed protein product
MVLLYENNLWLI
>ORF2_MSTRG.69964.2:114:209 unnamed protein product
MLLSPNYSTSILRTFSSQTLTIHFSSKNQVI
>ORF3_MSTRG.69964.2:252:308 unnamed protein product
MTISGLISVMVLVQLGPP
>ORF4_MSTRG.69964.2:13:69 unnamed protein product
MPKVKHIIWFYYMKIIFG
>ORF5_MSTRG.69964.2:62:100 unnamed protein product
MVDLTGELILNE
>ORF6_MSTRG.69964.2:245:325 unnamed protein product, partial
MDTDDFWANLSNGACAARSTIIAFCQR
>ORF7_MSTRG.69964.2:167:135 unnamed protein product
MRRKCSQYTC
>ORF8_MSTRG.69964.2:35:0 unnamed protein product, partial
MMCFTLGISSIL
>ORF9_MSTRG.69964.2:322:206 unnamed protein product
MTECNYGGPSCTSTITEISPEIVSIHPMLPTKIETEED
>ORF10_MSTRG.69964.2:306:223 unnamed protein product
MVDLAAQAPLLRLAQKSSVSILCFQQK
>ORF11_MSTRG.69964.2:219:184 unnamed protein product
MKKTKLPDFLS
>ORF12_MSTRG.69964.2:177:1 unnamed protein product, partial
MLRSAKKMFAIYLLSNLVKAAVNHPPYSFKINSPVKSTKDYFHIVKPDDVFYFGHFLYF

Check Peptide Activity