lncRNA Details - CoNCRAtlas

Basic Information

CoNCRAtlas ID	CoLNCGB22043
Transcript	MSTRG.68463.1
Length	653 bp
GC Content	37.27%
Locus	D09:44174937-44175589 (-)
Direction	sense
Type	genic
Exon Number	1
Coding Probability	CNCI score: -0.086016 \| CPC2 non-coding probability: 0.931621 \| PLncPRO non-coding probability: 0.944

>MSTRG.68463.1 CoLNCGB22043
ATGAAAAAGAAAAAGAGTCAACAGCAACAAAAGAAGATAAAAGTGTAGCATTATAAGATC
ACATCAATCTTTGGCTAGACGATGAAGTGAGAAAGGAGAAAGATGTAGAGCTCCCTTCAA
TCCAAACAAGGATCTAACTTTAAAGGTAATGAAGCTCCTGAGATATGGAAGCCGCAAGCC
TATCCCTCCCAACATGGGATAGGACTGTGGGATCCATAGCCAAGCAGCTCAATATACCCA
GCAAGAAACTCTATTGGACTTCAAGGAGCTCCATTCCTAACCCCCCACCTTCTTACTTTG
GATTACATCTAAATACTTGGGCTGATTTTCTTCTTTTTCTTCTTCCTAATAGCCATATTT
ATTCACTAAAACCTGACCACTTTAAACAAACACTTACCCTAACCCTAGACAACTTACCAT
AAACGGGAAGAAAATACAGAAGCAAGATTAAAAGCAAAAGCAAAACACATCTTTTCTTTT
CCCCTATAAACTGGAAAACCGAAAGTACACAACTATTTGAGTAAACGATCAATCTTTAGT
TAAGATGAGAAGATGTGATCTCTCAACCCCACTAGAGAAAAAAGCCAAACATTTTTTTCC
ATCACAAAAGCAAATCCATGAAACTAGACTAAAATACAAAAAACTCGGAACA

Not available

Expression Profile

Tissue Specificity Index: Anther: 0.0264; Bract: 0.0792; Fiber: 0.0177; Filament: 0.0454; Hypocotyl: 0.1273; Leaf: 0.0381; Ovule: 0.0317; Petal: 0.0678; Pistil: 0.0607; Root: 0.0176; Sepal: 0.0339; Stem: 0.1107; Stigma: 0.2927; Torus: 0.0508 | Tau: 0.8142

Overlapping Elements

No overlap molecule

Targeted By

gba-miR159a, gba-miR159b, gba-miR159a, gba-miR159b

sORFs

>MSTRG.68463.1:1-48 ORF1_MSTRG.68463.1:0:47
ATGAAAAAGAAAAAGAGTCAACAGCAACAAAAGAAGATAAAAGTGTAG
>MSTRG.68463.1:322-369 ORF2_MSTRG.68463.1:321:368
CTGATTTTCTTCTTTTTCTTCTTCCTAATAGCCATATTTATTCACTAA
>MSTRG.68463.1:149-202 ORF3_MSTRG.68463.1:148:201
ATGAAGCTCCTGAGATATGGAAGCCGCAAGCCTATCCCTCCCAACATGGGATAG
>MSTRG.68463.1:545-652 ORF4_MSTRG.68463.1:544:651
ATGAGAAGATGTGATCTCTCAACCCCACTAGAGAAAAAAGCCAAACATTTTTTTCCATCACAAAAGCAAA
TCCATGAAACTAGACTAAAATACAAAAAACTCGGAACA
>MSTRG.68463.1:165-422 ORF5_MSTRG.68463.1:164:421
ATGGAAGCCGCAAGCCTATCCCTCCCAACATGGGATAGGACTGTGGGATCCATAGCCAAGCAGCTCAATA
TACCCAGCAAGAAACTCTATTGGACTTCAAGGAGCTCCATTCCTAACCCCCCACCTTCTTACTTTGGATT
ACATCTAAATACTTGGGCTGATTTTCTTCTTTTTCTTCTTCCTAATAGCCATATTTATTCACTAAAACCT
GACCACTTTAAACAAACACTTACCCTAACCCTAGACAACTTACCATAA
>MSTRG.68463.1:c532-359 ORF6_MSTRG.68463.1:531:358
TTGATCGTTTACTCAAATAGTTGTGTACTTTCGGTTTTCCAGTTTATAGGGGAAAAGAAAAGATGTGTTT
TGCTTTTGCTTTTAATCTTGCTTCTGTATTTTCTTCCCGTTTATGGTAAGTTGTCTAGGGTTAGGGTAAG
TGTTTGTTTAAAGTGGTCAGGTTTTAGTGAATAA
>MSTRG.68463.1:c244-140 ORF7_MSTRG.68463.1:243:139
TTGCTGGGTATATTGAGCTGCTTGGCTATGGATCCCACAGTCCTATCCCATGTTGGGAGGGATAGGCTTG
CGGCTTCCATATCTCAGGAGCTTCATTACCTTTAA
>MSTRG.68463.1:c639-529 ORF8_MSTRG.68463.1:638:528
TTGTATTTTAGTCTAGTTTCATGGATTTGCTTTTGTGATGGAAAAAAATGTTTGGCTTTTTTCTCTAGTG
GGGTTGAGAGATCACATCTTCTCATCTTAACTAAAGATTGA
>MSTRG.68463.1:c264-229 ORF9_MSTRG.68463.1:263:228
TTGAAGTCCAATAGAGTTTCTTGCTGGGTATATTGA
>MSTRG.68463.1:c195-64 ORF10_MSTRG.68463.1:194:63
ATGTTGGGAGGGATAGGCTTGCGGCTTCCATATCTCAGGAGCTTCATTACCTTTAAAGTTAGATCCTTGT
TTGGATTGAAGGGAGCTCTACATCTTTCTCCTTTCTCACTTCATCGTCTAGCCAAAGATTGA
>MSTRG.68463.1:c51-1 ORF11_MSTRG.68463.1:50:0
ATGCTACACTTTTATCTTCTTTTGTTGCTGTTGACTCTTTTTCTTTTTCAT
>MSTRG.68463.1:c602-540 ORF12_MSTRG.68463.1:601:539
ATGGAAAAAAATGTTTGGCTTTTTTCTCTAGTGGGGTTGAGAGATCACATCTTCTCATCTTAA
>MSTRG.68463.1:c512-414 ORF13_MSTRG.68463.1:511:413
TTGTGTACTTTCGGTTTTCCAGTTTATAGGGGAAAAGAAAAGATGTGTTTTGCTTTTGCTTTTAATCTTG
CTTCTGTATTTTCTTCCCGTTTATGGTAA
>MSTRG.68463.1:c356-309 ORF14_MSTRG.68463.1:355:308
ATGGCTATTAGGAAGAAGAAAAAGAAGAAAATCAGCCCAAGTATTTAG
>MSTRG.68463.1:c227-180 ORF15_MSTRG.68463.1:226:179
CTGCTTGGCTATGGATCCCACAGTCCTATCCCATGTTGGGAGGGATAG

>ORF1_MSTRG.68463.1:0:47 unnamed protein product, partial
MKKKKSQQQQKKIKV
>ORF2_MSTRG.68463.1:321:368 unnamed protein product
MIFFFFFFLIAIFIH
>ORF3_MSTRG.68463.1:148:201 unnamed protein product
MKLLRYGSRKPIPPNMG
>ORF4_MSTRG.68463.1:544:651 unnamed protein product, partial
MRRCDLSTPLEKKAKHFFPSQKQIHETRLKYKKLGT
>ORF5_MSTRG.68463.1:164:421 unnamed protein product
MEAASLSLPTWDRTVGSIAKQLNIPSKKLYWTSRSSIPNPPPSYFGLHLNTWADFLLFLLPNSHIYSLKP
DHFKQTLTLTLDNLP
>ORF6_MSTRG.68463.1:531:358 unnamed protein product
MIVYSNSCVLSVFQFIGEKKRCVLLLLLILLLYFLPVYGKLSRVRVSVCLKWSGFSE
>ORF7_MSTRG.68463.1:243:139 unnamed protein product
MLGILSCLAMDPTVLSHVGRDRLAASISQELHYL
>ORF8_MSTRG.68463.1:638:528 unnamed protein product
MYFSLVSWICFCDGKKCLAFFSSGVERSHLLILTKD
>ORF9_MSTRG.68463.1:263:228 unnamed protein product
MKSNRVSCWVY
>ORF10_MSTRG.68463.1:194:63 unnamed protein product
MLGGIGLRLPYLRSFITFKVRSLFGLKGALHLSPFSLHRLAKD
>ORF11_MSTRG.68463.1:50:0 unnamed protein product, partial
MLHFYLLLLLLTLFLFH
>ORF12_MSTRG.68463.1:601:539 unnamed protein product
MEKNVWLFSLVGLRDHIFSS
>ORF13_MSTRG.68463.1:511:413 unnamed protein product
MCTFGFPVYRGKEKMCFAFAFNLASVFSSRLW
>ORF14_MSTRG.68463.1:355:308 unnamed protein product
MAIRKKKKKKISPSI
>ORF15_MSTRG.68463.1:226:179 unnamed protein product
MLGYGSHSPIPCWEG

Check Peptide Activity