Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID99906_PtRNAdb
Plant SourceTriticum dicoccoides     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-5.trna553
tRNA locuschr-5 : 722882895 - 722883103 (+)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Triticum_dicoccoides plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Triticum_dicoccoides plant by clicking on the isodecoder]

tRNA Sequence
GCCTGCCTAGCTCAGTTGGTAGAGCTCAAGGTTCTTAACCTTGTGGTCTTGGGTTCGAGCTCCAAGGCGGGCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>...............................................................................................................................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GTAGGTTGTTCAACATTTATGGTAATATGGGTGAACCTAAGGGATTGATTATATCTTCCTTTTAATTATATAATAGATAGATTGTCAAAAAGATCACATT
Downstream sequence (upto 100nt)
ATTTATTTTTGGTGCTTCCACATATTTTATTTTCTTTCTGGATTTGTACCCTTTTTTGACCAATTATTTTAGGTATTTGGGATAACTTAGAGTTATGTAT
Mature tRNA
GCCUGCCUAGCUCAGUUGGUAGAGCUCAAGGUUCUUAACCUUGUGGUCUUGGGUUCGAGCUCCAAGGCGGGCA
Intron Sequence
GCACATGGTTTGTTTGCTACCTGAGCAAACTTGCCTTTCCTGCAGCCATCCTAGCCCCACGATTTAGGACGAGTGAGCCGGAGATCACTGTTTGGAATGGTAGGACTGCCTAGGTAGCACACCATAGAGGCTCATT
Intron Position38-173
Infernal Score61.6
HMM Score34.70
Secondary structure Score26.90