Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID99652_PtRNAdb
Plant SourceTriticum dicoccoides     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-5.trna260
tRNA locuschr-5 : 634695712 - 634695462 (-)
IsoacceptorTyr

[NOTE: User can view the results of the consensus based study of all the tRNAs of Tyr isoacceptor in Triticum_dicoccoides plant by clicking on the isoacceptor]

IsodecoderGTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of GTA isodecoder in Triticum_dicoccoides plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGTATTTGCAGATCAATCCTTAGGCACCGCTTGGAATGGGGGTAATTTTATACGCGTGTATTTATTCTACAGGTGTAAGTTACAGGTCAACAGTTAAGATCAGCCTGAAATGAAAACGAACCGGAGGAGGTCCGTATCTTATACCGGCCAGAAAACGAGCAGAAACGCTAATCCAAACAGGGCCTTAGGTCGCTGGTTCGAATCCGGCAGGTCGGA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>...........................................................................................................................................................................................<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GTTTTCCTCACTGTTGATTAGCAAATCGTGCATGTGGTGCACTAATCCTTGTCACACCTTCTTATGGTATTAAATTAGCATAATTTATTGTTAACAAAAA
Downstream sequence (upto 100nt)
CGTTGGACGTAATATTTTTTTGTCCACACGATGACGATGACGGGCCGCTTGTTTGGATGTTGCCCGATCTTTTTTGGCGGCTCCTTTTCCTGCTCTTGGG
Mature tRNA
CCGACCUUAGCUCAGUUGGUAGAGCGGAGGACUGUAGGGCCUUAGGUCGCUGGUUCGAAUCCGGCAGGUCGGA
Intron Sequence
TATTTGCAGATCAATCCTTAGGCACCGCTTGGAATGGGGGTAATTTTATACGCGTGTATTTATTCTACAGGTGTAAGTTACAGGTCAACAGTTAAGATCAGCCTGAAATGAAAACGAACCGGAGGAGGTCCGTATCTTATACCGGCCAGAAAACGAGCAGAAACGCTAATCCAAACAG
Intron Position38-215
Infernal Score51.4
HMM Score31.50
Secondary structure Score19.90