Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID99554_PtRNAdb
Plant SourceTriticum dicoccoides     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-5.trna140
tRNA locuschr-5 : 650100147 - 650100074 (-)
IsoacceptorGlu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Glu isoacceptor in Triticum_dicoccoides plant by clicking on the isoacceptor]

IsodecoderCTC

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTC isodecoder in Triticum_dicoccoides plant by clicking on the isodecoder]

tRNA Sequence
CCACTGCTTAGTTGGTAAAGCACAAAGCTCTCAACCTTATGGACGTGGGTTCAAGCCCCATGATGGGGG
tRNA secondary structure
>>.>>>>>>........<<<<..>>.>............<.<<......>>>>>.......<<<<<...<<<<.
Upstream sequence (upto 100nt)
CCCGACTCATCACATCATAATGAGTCGACCCTTGGGGGCTACCAATTGCTCCTATCAACAATTCAAGGTACACAAGTCTTAGTCCATTATATTGAAGGAT
Downstream sequence (upto 100nt)
TTACATCATATGATGTTATTCTCAATGAAGTATATATAAAGTCCCAGCTCAATATTATCTTACTAAGCCGGTCCTTGGGGGCCACATGTTGTTGTTCAAA
Mature tRNA
CCACUGCUUAGUUGGUAAAGCACAAAGCUCUCAACCUUAUGGACGUGGGUUCAAGCCCCAUGAUGGGGG
Intron Sequence
ACCTT
Intron Position34-38
Infernal Score27.3
HMM Score20.60
Secondary structure Score6.70