Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID987_PtRNAdb
Plant SourceActinidia eriantha     |     Phanerogamae -->Dicot
Genome levelNuclear
tRNA IDchr-XXII.trna7
tRNA locuschr-XXII : 16396068 - 16395993 (-)
IsoacceptorSup

[NOTE: User can view the results of the consensus based study of all the tRNAs of Sup isoacceptor in Actinidia_eriantha plant by clicking on the isoacceptor]

IsodecoderTTA

[NOTE: User can view the results of the consensus based study of all the tRNAs of TTA isodecoder in Actinidia_eriantha plant by clicking on the isodecoder]

tRNA Sequence
GACAGTTTGGCCGAGTGGTTAAGGCGCCAGAATTTAGCTCTGGTCCGAAGGGCGTTTGTCAAATCCCCAGCTGTCA
tRNA secondary structure
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<......>>>.>..........<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GAAATCTCATCTCAGCCGTGGATTAACTCAAATGAAATTTCAATGTTAAATGATTTTTATTTTATATATAGTTATATTGATGAAGATGTTACTTTCAAGA
Downstream sequence (upto 100nt)
TTTCGAGGAGAAAGTACATTTTTTGAGATTAAAAAAATAAAAGTAATGTATTTTCATTTTAACATTCGACCCCCTGAGTTTACAGCCCTAAGAAAAGTTA
Mature tRNA
GACAGUUUGGCCGAGUGGUUAAGGCGCCAGAAUUUAGCUCUGGUCCGAAGGGCGUUUGUCAAAUCCCCAGCUGUCA
HMM Score13.30
Secondary structure Score15.30