Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID98152_PtRNAdb
Plant SourceTriticum dicoccoides     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-2.trna183
tRNA locuschr-2 : 576959338 - 576959246 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Triticum_dicoccoides plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Triticum_dicoccoides plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGGGTGGTGGCGCCGTTCGCTAGCGCGTAGGTCTCATAGCTGAAATAAATGCGAGTGATCCTGAGGTCGAGAGTTCGAGCCTCTCTCACCCCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>............................<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
ACGCAGATCTGTGGTTAATTTAAGTTGTGTTAAACCTCATCACTTCATCTCTTGAATTTACTTCATGATCTGTACGGTGTTTCGCTCGAGATTCAACAGT
Downstream sequence (upto 100nt)
CACTGAAAAAAGACCACTGTAGTGATGAAACGCTCAATGGCAACTTGGGTCGCCACATGTGCACCTGATTCATCAGGTGAAACTGAGCAAGTCTGAACCT
Mature tRNA
GGGGUGGUGGCGCCGUUCGCUAGCGCGUAGGUCUCAUAAUCCUGAGGUCGAGAGUUCGAGCCUCUCUCACCCCA
Intron Sequence
GCTGAAATAAATGCGAGTG
Intron Position39-57
Infernal Score46.3
HMM Score22.60
Secondary structure Score23.70