Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID97411_PtRNAdb
Plant SourceTriticum dicoccoides     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-14.trna313
tRNA locuschr-14 : 686198764 - 686198692 (-)
IsoacceptorGlu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Glu isoacceptor in Triticum_dicoccoides plant by clicking on the isoacceptor]

IsodecoderCTC

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTC isodecoder in Triticum_dicoccoides plant by clicking on the isodecoder]

tRNA Sequence
TCTGTCGTAGTCTAGGTGGTTAGCATACTCGGCTCTCACCCGAGAGACCCGGTTTCAAGTCCCGGCGACAGAA
tRNA secondary structure
>>>>>>>..>>.>.........<.<<.>>>>>.......<<<<<....>>>>.........<<<<<<<<<<<.
Upstream sequence (upto 100nt)
GGATCGCAACCACAATGGGCAATGCTGCGCTGCGCGGTCCGGCTCAGCTCTGCGACCTCGACTCCGACTGGCTCCGGCTCATGATTCCCTTGCTCATGAT
Downstream sequence (upto 100nt)
GTAAAATGTGTTTTTTTGTGCTTAACCGTTTTTTTTTTATAATTTGGATTTCTTTTCTTTTGGATGTGTTGAGTATATTGGGTACGTGTATATTTGTGTG
Mature tRNA
UCUGUCGUAGUCUAGGUGGUUAGCAUACUCGGCUCUCACCCGAGAGACCCGGUUUCAAGUCCCGGCGACAGAA
HMM Score38.20
Secondary structure Score15.10