Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID96937_PtRNAdb
Plant SourceTriticum dicoccoides     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-13.trna351
tRNA locuschr-13 : 577649084 - 577649422 (+)
IsoacceptorVal

[NOTE: User can view the results of the consensus based study of all the tRNAs of Val isoacceptor in Triticum_dicoccoides plant by clicking on the isoacceptor]

IsodecoderTAC

[NOTE: User can view the results of the consensus based study of all the tRNAs of TAC isodecoder in Triticum_dicoccoides plant by clicking on the isodecoder]

tRNA Sequence
GCGTGTGTGGATGAGCGGTGCAATCTCTTTTGGCTTACACCCACAGTGTCAGGGGTTCAAACCCCCCCTCGCACA
tRNA secondary structure
>.>>>.>..>>>..........<<<.>>..>>>...............................................................................................................................................................................................................................................................................<<<.<<.....>>>>.......<<<<.<.<<<.<.
Upstream sequence (upto 100nt)
TGGATATGTTCCCATGAGGAATTGGTGGTGAATTTGATTTTGGAGATCCAAGCATTCTACTTGAGATCCTTGCGCACCTTTCAATTTTTTTCGCGTGGAC
Downstream sequence (upto 100nt)
CAGCTTCCAAAGGATAACAAAAATATATATCAAAGTTCAGTAATCATCAAACATTGTTGAATTCAAATTCCACTCCTTTCTCATACTACTAGTGAAATAG
Mature tRNA
GCGUGUGUGGAUGAGCGGUGCAAUCUCUUUUGGCUUACACCCACAGUGUCAGGGGUUCAAACCCCCCCUCGCACA
Intron Sequence
CCCATTAACCCAAGGCGAGTCTCAAAAATGGGTATTTGCACAGTCTGTGTATTGATATACCAGATCGACTAATGCTCTGAGGTTGATGTGATGTATTCTCAAACTCTATATCATGTCTCCATAAGCTGATGACCATCACACGAGCAAGCAAACCAATCCCACCTAGTAGGAGTTTTGGCACTAGAGGAAGGCGATGAGTCCGCAAGAAATGATGTCTCGACGAGGAGTACGCCCGGTCTGTCTTGATTTGCTTCATCCATGATT
Intron Position40-303
Infernal Score20.6
HMM Score10.70
Secondary structure Score9.90