Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID96619_PtRNAdb
Plant SourceTriticum dicoccoides     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-12.trna489
tRNA locuschr-12 : 118111820 - 118111732 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Triticum_dicoccoides plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Triticum_dicoccoides plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGGGTGGTGGCGCAGTTGGCTAGCGCGTAGGTCTCATAGCTATAATGTGAGTGATCTTGAGGTCGAGAGTTCGAGCCTCTCTCACCCCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>........................<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TGATGGATGGTCCAGCTGATTTGGAAAGTGTTGATCTTTGCTTAATCTGAACACATGGAATTGCTATGAAGAGATGTTATTTCTCCACTAATCCAACAAA
Downstream sequence (upto 100nt)
CCTAAAATTGGCCTTGTGATGATGAAACGCTCGGTGACAACTTGGGTCGTCACACCTACATCCGAATCATCAGGTGAAATTGAGCAAATCTGAACCTGGT
Mature tRNA
GGGGUGGUGGCGCAGUUGGCUAGCGCGUAGGUCUCAUAAUCUUGAGGUCGAGAGUUCGAGCCUCUCUCACCCCA
Intron Sequence
GCTATAATGTGAGTG
Intron Position39-53
Infernal Score58.4
HMM Score40.50
Secondary structure Score17.90