Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID96615_PtRNAdb
Plant SourceTriticum dicoccoides     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-12.trna485
tRNA locuschr-12 : 118128930 - 118128842 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Triticum_dicoccoides plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Triticum_dicoccoides plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGGGTGGTGGCGCAGTTGGCTAGCGCGTAGGTCTCATAGCTATAACGTGAGTGATCCTGAGGTCGAGAGTTCGACCCTCTCTCACCCCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>>........................<<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
CGATGGATGGTCCAGGTGACTTGGAAAGTGTTGATCTTTGCTTAATCTGAACACATGGAATTGTTATGAAGAGATGTTATTTCTCCACGAATCCAACAAA
Downstream sequence (upto 100nt)
CCAAAAATTGGCCTTGTGATGATGAAACGCTCGGTGACAACTTGGGTCGTCATACCTACATCTGAATCATCAGCTGAAATTGAGCTAATCTGAACCTGAT
Mature tRNA
GGGGUGGUGGCGCAGUUGGCUAGCGCGUAGGUCUCAUAAUCCUGAGGUCGAGAGUUCGACCCUCUCUCACCCCA
Intron Sequence
GCTATAACGTGAGTG
Intron Position39-53
Infernal Score61.9
HMM Score38.40
Secondary structure Score23.50