Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID96580_PtRNAdb
Plant SourceTriticum dicoccoides     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-12.trna443
tRNA locuschr-12 : 237474280 - 237474211 (-)
IsoacceptorGlu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Glu isoacceptor in Triticum_dicoccoides plant by clicking on the isoacceptor]

IsodecoderCTC

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTC isodecoder in Triticum_dicoccoides plant by clicking on the isodecoder]

tRNA Sequence
TCCACTGCTCAGTTGGTAAAGCACAAAGCTCTCAACCTTGTGGACGTGGGTTCACGCCCCATGATGGGAG
tRNA secondary structure
>>>...>>>..........<<<.>>>.>.......<.<<<.....>>>>>.......<<<<<....<<<.
Upstream sequence (upto 100nt)
AAGACCCGACTCATCATATCATAGTGAGCCGGCCCTTAGGGGCTACAATTGCTCTTGTCAACAATTCAAGGTACACAAATTTTCATCTATTATTGAAGGA
Downstream sequence (upto 100nt)
TTACATAATATAATGTTATTCTCAATGAAGTATATATAAAATCCCAGCTCAATATTATCTTACTGAGCCGGCCCTTGGGGGCTACACGTTGCTATTACAT
Mature tRNA
UCCACUGCUCAGUUGGUAAAGCACAAAGCUCUCAACCUUGUGGACGUGGGUUCACGCCCCAUGAUGGGAG
HMM Score24.00
Secondary structure Score9.40