Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID96396_PtRNAdb
Plant SourceTriticum dicoccoides     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-12.trna231
tRNA locuschr-12 : 498731854 - 498732134 (+)
IsoacceptorPhe

[NOTE: User can view the results of the consensus based study of all the tRNAs of Phe isoacceptor in Triticum_dicoccoides plant by clicking on the isoacceptor]

IsodecoderAAA

[NOTE: User can view the results of the consensus based study of all the tRNAs of AAA isodecoder in Triticum_dicoccoides plant by clicking on the isodecoder]

tRNA Sequence
AATCAGATGGCCGAGTTGGTCTAAGGCGCCAGATTAAAGCTCTGGCCCGAAAGGGCGTGGGTTCAAATCCCACTCTGGTCA
tRNA secondary structure
.>>>>>>..>>>............<<<.>>>>>...............................................................................................................................................................................................................<<<<<...........>>>>>.......<<<<<<<<<<<..
Upstream sequence (upto 100nt)
GGGTTCGAATCCCACTCTGGTCATTATTATTTTTGCATTTTGCTCTCGAGTAGTTCAACGACAAGTACTTCAATGCCTAGTACACATTTTGAGGCAAAAA
Downstream sequence (upto 100nt)
AATTCTTTTTTGAGGGAATATTTTTCTTTTCTCTCGGATATGCATTCATTTGCTTTTTCTCCCTTGAATATGAAAATTCACCGATGCAATATTTTACAAA
Mature tRNA
AAUCAGAUGGCCGAGUUGGUCUAAGGCGCCAGAUUAAAGCUCUGGCCCGAAAGGGCGUGGGUUCAAAUCCCACUCUGGUCA
Intron Sequence
TCCAGTTCTTTGGCAGATTCTTTCAGAATCTGACCCCTACACAAATTTTTCCAGAATCTTTGAGCCCCATTTGTTTTGCAATGTTATTTAGTTATGGTCTAATTAGTTAGGATTGTAAAACCAATGGAGGTCAAAGATTCTAGGAGAAACTAGGGAGGGGTAGATTCTGGGAGAATCCTGCAAAAGAACTGGGCCTAAGG
Intron Position40-239
Infernal Score47.4
HMM Score40.10
Secondary structure Score7.30