Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID96336_PtRNAdb
Plant SourceTriticum dicoccoides     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-12.trna165
tRNA locuschr-12 : 355885994 - 355886176 (+)
IsoacceptorLeu

[NOTE: User can view the results of the consensus based study of all the tRNAs of Leu isoacceptor in Triticum_dicoccoides plant by clicking on the isoacceptor]

IsodecoderGAG

[NOTE: User can view the results of the consensus based study of all the tRNAs of GAG isodecoder in Triticum_dicoccoides plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GTTCTGGTAGCTCAGCTGGTTAGAGCAAAACAAGCAACGGATTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTGGACTGCAAATCCTTTTTTCTTGTTTCAGTGGGAAGAGCAAGGGGCATTGCCCTGGAAATCCTTCAGTGGTTCGAATCCACATCTGAGCA
tRNA secondary structure
>>>>.>>..>>>>.........<<<<............>>>...............................................................................................................<<<....>>>>.......<<<<.<<.<<<<.
Upstream sequence (upto 100nt)
CGAGGGCCGTCCAGTCCCTGGCCGGCTCTCGGTTCTTGAGCAAGCTCCTCCACTGCAGGTAGGATGCTCATAGATGAAGAAAAGAGACTTTAGGCAAGTG
Downstream sequence (upto 100nt)
TCTTTTTTCGGTATGCCGCTCCGCGAATAAGGAGCGCCGCGAGGAGAGCGAGAGAACAAAGTGGGCTTTGGTGATGTCGGAGTTTGCACCTATTTGTATC
Mature tRNA
GUUCUGGUAGCUCAGCUGGUUAGAGCAAAACAAGCAACGGAUUGAGCAUCCUUCAGUGGUUCGAAUCCACAUCUGAGCA
Intron Sequence
AACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTGGACTGCAAATCCTTTTTTCTTGTTTCAGTGGGAAGAGCAAGGGGCATTGCCCTGGAA
Intron Position48-151
Infernal Score20.5
HMM Score12.60
Secondary structure Score7.90