Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID95657_PtRNAdb
Plant SourceTriticum dicoccoides     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-10.trna255
tRNA locuschr-10 : 464767068 - 464766981 (-)
IsoacceptorMet

[NOTE: User can view the results of the consensus based study of all the tRNAs of Met isoacceptor in Triticum_dicoccoides plant by clicking on the isoacceptor]

IsodecoderCAT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CAT isodecoder in Triticum_dicoccoides plant by clicking on the isodecoder]

tRNA Sequence
A-Box B-Box
GGGGTGGTGGCGCAGTTGGCTAGCGCGTAGCTCTCATAGCTAAGAGCGAGTGATCCTGAGGTTGAGAGTTCGAGCCTCTCTCACCCCA
tRNA secondary structure
>>>>>>>..>>>>.........<<<<.>>>.........................<<<.....>>>>>.......<<<<<<<<<<<<.
Upstream sequence (upto 100nt)
TGACCACGACGCCATGTACTCCTGGGAATTAAGCATGCATCCAGGATTTGCATGGGCCTGTAGCTAACAAGTAGGATTGTTTCGCTTGTAACACAACAAA
Downstream sequence (upto 100nt)
CCTAAAAATGACCATCGTTGTGATGAATCGCTCAGTGGCAACTTGGGTCGCCATATATGCGCCTGAACCATCAGGTGAATCGAGCATGTCTGAACCTGGT
Mature tRNA
GGGGUGGUGGCGCAGUUGGCUAGCGCGUAGCUCUCAUAAUCCUGAGGUUGAGAGUUCGAGCCUCUCUCACCCCA
Intron Sequence
GCTAAGAGCGAGTG
Intron Position39-52
Infernal Score51.7
HMM Score34.80
Secondary structure Score16.90